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matrix_protein

Euk-Vir

Lepeophtheirus_salmonis_rhabdovirus_127

matrix_protein__YP_010084459__Lepeophtheirus_salmonis_rhabdovirus_127__1573761

Identity

Accession:
YP_010084459 ↗
Protein ID:
matrix_protein
Kingdom:
euk

Quality

75.2 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Caligrhavirus› Lepeophtheirus_salmonis_rhabdovirus_127

TaxID: 1573761

Cluster

View cluster (89 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 44-198
PDB
Domain cluster: rep: matrix__YP_010087311__Muir_Springs_virus__932700__D68-219
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06326.19 best Vesiculo_matrix 37.1 4.50e-09 81.9% 55.8%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lg7A00 3.10.460.10 Alpha Beta › Roll › VSV matrix protein › VSV matrix protein 0.86 80.0 7.90e-01 100.0% 93.3%
2w2sA00 3.10.460.20 Alpha Beta › Roll › VSV matrix protein › Rhabdovirus matrix protein M2 0.82 74.0 7.27e-01 100.0% 90.8%
6iomB01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.78 27.0 3.98e-01 71.0% 67.5%
2vqeC02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.68 29.0 3.57e-01 72.9% 62.0%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.68 29.0 3.17e-01 73.5% 48.1%
4bfeA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 29.0 3.75e-01 71.6% 87.7%
4i0kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 32.0 3.86e-01 72.9% 86.3%
1azsA00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.52 38.0 3.57e-01 82.6% 60.5%
3o4oB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 31.0 3.50e-01 71.0% 80.7%
1f3vA00 3.30.70.680 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TRADD, N-terminal domain 0.51 43.0 4.33e-01 92.3% 93.7%
3r5gA00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.50 38.0 3.56e-01 80.6% 63.6%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
169957 845.1.1.0 ↗ a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein 0.84 79.0 7.42e-01 100.0% 86.4%
2966642 845.1.1.2 ↗ a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein › Vesiculo_matrix 0.84 79.0 7.32e-01 100.0% 84.1%
184954 845.1.1.0 ↗ a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein 0.82 74.0 7.27e-01 100.0% 90.8%
4028203 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.70 28.0 3.60e-01 71.6% 61.6%
4155789 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.69 29.0 3.31e-01 72.9% 51.7%
4832865 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.69 30.0 3.33e-01 73.5% 51.2%
4211925 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.69 29.0 3.12e-01 72.9% 45.9%
4153628 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.69 29.0 3.45e-01 72.9% 56.4%
4149478 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.68 29.0 3.28e-01 72.9% 51.7%
3652196 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.68 29.0 3.17e-01 73.5% 47.8%
3322115 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.68 29.0 3.41e-01 73.5% 55.7%
4956195 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.67 29.0 3.47e-01 73.5% 58.2%
3597467 230.2.1.0 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C 0.67 29.0 3.21e-01 73.5% 49.6%
4595711 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.67 29.0 3.15e-01 73.5% 48.1%
3925462 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.65 28.0 3.48e-01 72.3% 64.0%
4936039 304.51.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.60 40.0 4.67e-01 74.8% 97.3%
4316087 230.2.1.0 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C 0.57 29.0 3.36e-01 73.5% 65.8%
4886155 304.57.1.1 ↗ a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.57 37.0 3.82e-01 73.5% 68.0%
3955398 304.51.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.55 38.0 4.42e-01 73.5% 100.0%
4002543 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 33.0 3.80e-01 72.9% 87.6%
4067682 848.1.1.1 ↗ a+b complex topology › Hsp33 domain › Hsp33 domain › Hsp33 domain › HSP33 0.52 40.0 3.56e-01 81.3% 87.1%
4525091 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.51 32.0 2.97e-01 100.0% 46.8%
3301512 309.1.1.6 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C,Peptidase_M16_M 0.51 37.0 3.26e-01 76.1% 78.3%
4194439 848.1.1.1 ↗ a+b complex topology › Hsp33 domain › Hsp33 domain › Hsp33 domain › HSP33 0.51 41.0 3.59e-01 85.8% 86.0%