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matrix_protein

Euk-Vir

Harrison_Dam_virus

matrix_protein__YP_010086577__Harrison_Dam_virus__1569259

Identity

Accession:
YP_010086577 ↗
Protein ID:
matrix_protein
Kingdom:
euk

Quality

66.3 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Sunrhavirus› Harrison_Dam_virus

TaxID: 1569259

Cluster

View cluster (89 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-176
PDB
Domain cluster: rep: matrix__YP_010087311__Muir_Springs_virus__932700__D68-219
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6iomB01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.73 27.0 3.68e-01 72.9% 62.3%
2w2sA00 3.10.460.20 Alpha Beta › Roll › VSV matrix protein › Rhabdovirus matrix protein M2 0.72 66.0 6.28e-01 100.0% 90.2%
1lg7A00 3.10.460.10 Alpha Beta › Roll › VSV matrix protein › VSV matrix protein 0.69 63.0 5.99e-01 100.0% 92.7%
7pwfD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.65 28.0 3.47e-01 72.9% 64.0%
3gtyX02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.65 32.0 4.11e-01 75.7% 79.8%
2vqeC02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.65 29.0 3.39e-01 75.0% 59.0%
1zpvA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 35.0 4.29e-01 72.9% 94.1%
1cjyA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 42.0 4.39e-01 75.0% 93.7%
5is2A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 33.0 3.98e-01 73.6% 87.9%
2nyiA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 32.0 3.98e-01 71.4% 95.1%
1jw3A00 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.56 32.0 3.22e-01 88.6% 52.9%
4bbyA05 3.30.300.330 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.55 36.0 3.97e-01 70.0% 83.3%
7alkA01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 40.0 3.89e-01 75.7% 100.0%
7altB01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 40.0 3.86e-01 77.1% 96.8%
3on9A00 2.60.240.20 Mainly Beta › Sandwich › Viral Chemokine Inhibitor; Chain A › 0.53 38.0 3.67e-01 75.0% 78.8%
2ivfC00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 37.0 3.30e-01 74.3% 67.8%
5weeB00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.52 36.0 3.34e-01 98.6% 54.0%
2x3gA00 3.30.70.1910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 32.0 3.44e-01 80.0% 75.0%
2ogkD00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.50 36.0 3.65e-01 75.0% 84.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028203 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.69 29.0 3.48e-01 73.6% 57.6%
4832865 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.64 30.0 3.18e-01 76.4% 49.6%
4317100 230.2.1.2 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › VAR1 0.61 31.0 3.46e-01 74.3% 60.9%
4182228 812.1.1.1 ↗ a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE 0.58 30.0 3.68e-01 77.1% 78.8%
3738493 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.55 47.0 4.16e-01 92.9% 72.9%
5054179 304.42.1.1 ↗ a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC 0.55 41.0 4.08e-01 77.1% 92.4%
3611302 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 4.08e-01 75.0% 95.6%
3588477 304.31.1.1 ↗ a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › HMG-CoA_red 0.55 38.0 4.21e-01 72.1% 96.4%
4945880 304.42.1.1 ↗ a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC 0.54 40.0 3.99e-01 77.1% 89.7%
3959611 304.42.1.0 ↗ a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC 0.54 39.0 3.93e-01 75.7% 87.9%
3782670 314.1.1.6 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.52 43.0 3.51e-01 90.7% 66.2%
5035879 256.1.1.0 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.52 26.0 3.48e-01 85.0% 100.0%
3931669 304.4.1.54 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless 0.51 36.0 3.56e-01 75.7% 66.7%
3964010 314.1.1.6 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.51 43.0 3.82e-01 93.6% 66.7%
4002543 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 33.0 3.69e-01 75.7% 87.6%
3750557 304.47.1.0 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain 0.50 37.0 4.04e-01 78.6% 96.5%