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me-53
Euk-VirSucra_jujuba_nucleopolyhedrovirus
me-53__YP_009186707__Sucra_jujuba_nucleopolyhedrovirus__1563660
Identity
- Accession:
- YP_009186707 ↗
- Protein ID:
- me-53
- Kingdom:
- euk
Quality
71.2
mean pLDDT
Taxonomy
TaxID: 1563660
Cluster
View cluster (44 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 37-183
Domain cluster:
rep: me53_protein__YP_007250543__Thysanoplusia_orichalcea_nucleopolyhedrovirus__101850__D109-237
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06061.17 best | Baculo_ME53 | 107.8 | 1.00e-30 | 95.2% | 40.3% |
D2
high
residues 191-238_262-289
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mcnA01 | 3.30.70.560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK | 0.71 | 52.0 | 4.15e-01 | 100.0% | 40.1% |
| 5ajiB03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 52.0 | 4.86e-01 | 100.0% | 63.2% |
| 4igbB02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.70 | 63.0 | 5.09e-01 | 100.0% | 63.6% |
| 2fmaA00 | 3.30.1490.140 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Amyloidogenic glycoprotein, copper-binding domain | 0.68 | 49.0 | 5.38e-01 | 100.0% | 100.0% |
| 2jz7A00 | 3.30.1660.30 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Selenium-binding protein | 0.67 | 47.0 | 4.65e-01 | 100.0% | 69.1% |
| 3a27A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.66 | 51.0 | 3.66e-01 | 100.0% | 28.8% |
| 3mxtA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.66 | 60.0 | 5.47e-01 | 100.0% | 80.0% |
| 5xyiY00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 45.0 | 4.08e-01 | 100.0% | 53.3% |
| 4a2aA02 | 3.30.1490.110 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.63 | 55.0 | 5.33e-01 | 100.0% | 89.7% |
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.62 | 45.0 | 4.33e-01 | 98.7% | 67.4% |
| 3vynA01 | 2.60.40.3780 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 49.0 | 4.76e-01 | 89.5% | 77.0% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.61 | 45.0 | 4.18e-01 | 100.0% | 60.6% |
| 1o51A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 44.0 | 4.18e-01 | 100.0% | 66.3% |
| 2vngA00 | 2.60.120.1060 | Mainly Beta › Sandwich › Jelly Rolls › NPCBM/NEW2 domain | 0.60 | 51.0 | 4.01e-01 | 97.4% | 54.4% |
| 3wa2X01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 40.0 | 3.87e-01 | 78.9% | 60.9% |
| 6izhE00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.58 | 50.0 | 4.40e-01 | 100.0% | 93.4% |
| 4krgA02 | 3.40.50.12180 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 48.0 | 3.47e-01 | 98.7% | 33.2% |
| 1v8cA02 | 3.30.1370.80 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain | 0.57 | 45.0 | 4.45e-01 | 100.0% | 81.2% |
| 3u6yA00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.56 | 45.0 | 4.17e-01 | 100.0% | 67.7% |
| 7jrjK01 | 3.30.70.141 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain | 0.55 | 50.0 | 3.88e-01 | 98.7% | 49.4% |
| 2okqB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 47.0 | 4.13e-01 | 100.0% | 62.7% |
| 3bh7B02 | 3.30.70.141 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain | 0.55 | 47.0 | 4.08e-01 | 100.0% | 61.2% |
| 8igrI01 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.55 | 49.0 | 3.73e-01 | 100.0% | 98.9% |
| 7c51A01 | 3.30.70.2970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 | 0.54 | 47.0 | 4.18e-01 | 100.0% | 70.3% |
| 4dzdA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.53 | 47.0 | 4.06e-01 | 100.0% | 69.9% |
| 5wy8B03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 46.0 | 4.10e-01 | 98.7% | 92.0% |
| 3isrA02 | 2.60.40.2250 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 46.0 | 4.24e-01 | 100.0% | 77.0% |
| 1qf6A02 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.53 | 46.0 | 4.16e-01 | 100.0% | 90.6% |
| 5x8tT00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.52 | 45.0 | 3.72e-01 | 100.0% | 77.1% |
| 3e3pA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 38.0 | 3.81e-01 | 97.4% | 78.2% |
| 3ramA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 43.0 | 3.84e-01 | 100.0% | 65.3% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5062146 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.78 | 53.0 | 5.10e-01 | 96.1% | 63.1% |
| 3589403 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.74 | 55.0 | 4.73e-01 | 98.7% | 50.0% |
| 4018552 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.68 | 58.0 | 3.90e-01 | 100.0% | 24.8% |
| 4467756 | 283.1.1.3 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase | 0.65 | 58.0 | 5.29e-01 | 100.0% | 77.7% |
| 4562028 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.65 | 52.0 | 4.23e-01 | 100.0% | 46.2% |
| 4957503 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.65 | 52.0 | 4.03e-01 | 100.0% | 39.4% |
| 2106053 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.65 | 45.0 | 4.08e-01 | 100.0% | 53.3% |
| 4985745 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.65 | 53.0 | 4.06e-01 | 100.0% | 40.6% |
| 5023942 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.63 | 51.0 | 4.02e-01 | 100.0% | 41.9% |
| None | — | 0.63 | 50.0 | 3.88e-01 | 97.4% | 39.4% | |
| 4608282 | 2484.1.1.70 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FtsA | 0.62 | 55.0 | 3.52e-01 | 100.0% | 20.0% |
| 3941013 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.62 | 47.0 | 3.27e-01 | 100.0% | 24.2% |
| 5040514 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.61 | 52.0 | 4.93e-01 | 94.7% | 98.9% |
| 5043214 | 304.8.1.82 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 | 0.61 | 47.0 | 4.60e-01 | 100.0% | 75.3% |
| 3901464 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 48.0 | 4.19e-01 | 85.5% | 86.1% |
| 4041226 | 2484.1.1.263 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA, EutA, FtsA | 0.61 | 53.0 | 3.39e-01 | 100.0% | 19.2% |
| 5013821 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.61 | 46.0 | 4.02e-01 | 100.0% | 52.5% |
| 3892767 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 46.0 | 4.08e-01 | 84.2% | 85.2% |
| 4109123 | 2484.1.1.27 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA | 0.59 | 51.0 | 3.80e-01 | 100.0% | 37.1% |
| 3918813 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 52.0 | 4.27e-01 | 100.0% | 63.0% |
| 4435043 | 2484.1.1.178 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA | 0.58 | 49.0 | 3.19e-01 | 100.0% | 19.9% |
| 4032204 | 2484.1.1.178 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA | 0.57 | 49.0 | 3.18e-01 | 100.0% | 20.0% |
| 5023829 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 47.0 | 3.67e-01 | 100.0% | 42.0% |
| 3431965 | 221.1.1.18 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ATG8 | 0.57 | 45.0 | 4.69e-01 | 98.7% | 100.0% |
| 3917799 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 49.0 | 3.62e-01 | 98.7% | 89.8% |
| 3797634 | 10.30.1.0 ↗ | beta sandwiches › jelly-roll › Latrophilin 1 gal_lectin domain › Latrophilin 1 gal_lectin domain | 0.56 | 49.0 | 4.53e-01 | 98.7% | 99.0% |
| 3291626 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.56 | 51.0 | 3.60e-01 | 98.7% | 35.8% |
| 4054010 | 11.1.1.246 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 | 0.56 | 49.0 | 4.39e-01 | 97.4% | 82.9% |
| 4926928 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.55 | 49.0 | 3.37e-01 | 100.0% | 31.2% |
| 4136515 | 310.3.1.23 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › RP854 | 0.55 | 45.0 | 3.63e-01 | 100.0% | 44.4% |
| 4998687 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 41.0 | 3.46e-01 | 80.3% | 76.9% |
| 4493575 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.55 | 49.0 | 3.22e-01 | 100.0% | 24.4% |
| 5051022 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 37.0 | 3.87e-01 | 76.3% | 100.0% |
| 3784982 | 2003.1.5.44 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MT-A70 | 0.52 | 45.0 | 3.05e-01 | 100.0% | 25.1% |
| 3994059 | 222.1.1.10 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 | 0.52 | 38.0 | 3.89e-01 | 78.9% | 98.7% |
| 3616692 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.52 | 42.0 | 2.56e-01 | 94.7% | 13.6% |
| 2996570 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.51 | 42.0 | 3.90e-01 | 94.7% | 87.0% |
D3
high
residues 312-372
Domain cluster:
rep: ME53__YP_009182323__Diatraea_saccharalis_granulovirus__1675862__D239-309
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06061.17 best | Baculo_ME53 | 51.9 | 1.00e-13 | 100.0% | 18.2% |