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me53

Euk-Vir

Clostera_anastomosis_granulovirus_Henan

me53__YP_008720070__Clostera_anastomosis_granulovirus_Henan__1986291

Identity

Accession:
YP_008720070 ↗
Protein ID:
me53
Kingdom:
euk

Quality

77.6 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Clostera_anastomosis_granulovirus_Henan

TaxID: 1986291

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 193-283
PDB
Domain cluster: rep: ME53__YP_009345870__Mythimna_unipuncta_granulovirus_B__2169746__D122-211
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1l2mA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.63 38.0 3.56e-01 100.0% 46.6%
1o5uA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 37.0 3.76e-01 97.8% 62.5%
3r0nA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 53.0 4.70e-01 98.9% 89.1%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.59 52.0 4.17e-01 100.0% 52.7%
1j5yA02 3.30.1340.20 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain 0.58 47.0 4.48e-01 100.0% 75.7%
5lz6A00 2.60.120.680 Mainly Beta › Sandwich › Jelly Rolls › GOLD domain 0.57 46.0 4.12e-01 100.0% 63.5%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.56 51.0 4.37e-01 100.0% 79.9%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 38.0 3.38e-01 70.3% 66.9%
4p0dA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 37.0 3.47e-01 89.0% 54.8%
1h30A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 3.75e-01 100.0% 72.1%
4jklA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 4.35e-01 100.0% 82.1%
6u7iB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 4.38e-01 100.0% 84.8%
1rlhA02 3.40.1520.10 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like 0.54 42.0 4.06e-01 100.0% 74.3%
1lb6A00 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.54 48.0 4.08e-01 100.0% 98.1%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.54 48.0 4.17e-01 100.0% 80.4%
1jr7A00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.54 47.0 3.32e-01 100.0% 60.1%
2p9rA00 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.54 46.0 4.50e-01 100.0% 84.3%
2qkdA04 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.51 46.0 4.16e-01 100.0% 81.1%
2b5iC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 4.15e-01 98.9% 85.4%
1ut9A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 4.15e-01 97.8% 83.7%
1s55A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.50 45.0 3.79e-01 100.0% 76.9%
4h3wA01 2.60.290.20 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › Protein of unknown function (DUF4621), C-terminal domain 0.50 44.0 4.03e-01 100.0% 73.6%
2dluA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.50 41.0 3.87e-01 100.0% 73.0%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4236239 11.1.1.1199 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30703 0.65 45.0 4.87e-01 96.7% 86.7%
3933721 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.62 56.0 4.59e-01 100.0% 92.1%
5022263 322.1.1.2 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › 3H 0.62 51.0 4.86e-01 100.0% 75.5%
3906213 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 53.0 4.90e-01 97.8% 85.2%
5072894 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.58 53.0 3.67e-01 100.0% 40.0%
2988168 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.58 52.0 4.27e-01 100.0% 80.6%
3893314 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.58 52.0 4.69e-01 98.9% 75.2%
4025027 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.57 48.0 4.49e-01 100.0% 75.5%
3237716 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.57 51.0 4.41e-01 100.0% 86.4%
3451106 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.57 50.0 4.44e-01 100.0% 96.3%
3654591 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.56 50.0 4.22e-01 100.0% 83.3%
3902712 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.55 50.0 3.85e-01 100.0% 50.7%
3640678 221.1.1.188 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF7767 0.55 48.0 4.61e-01 98.9% 85.7%
3271430 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.55 48.0 4.31e-01 100.0% 100.0%
4026938 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 47.0 4.27e-01 100.0% 70.4%
5033364 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 3.80e-01 95.6% 68.8%
2324017 3019.1.1.0 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain 0.51 42.0 3.88e-01 91.2% 93.4%
4954560 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 45.0 4.13e-01 100.0% 87.5%
5049438 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 37.0 3.17e-01 75.8% 61.4%
3836184 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.50 43.0 3.71e-01 98.9% 81.9%
3432951 821.1.1.6 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY_YIG_domain 0.50 44.0 3.72e-01 100.0% 83.1%
3249088 12.3.1.46 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.50 35.0 2.73e-01 73.6% 49.1%
5033710 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 45.0 4.32e-01 100.0% 87.6%
D2 high residues 294-372
PDB
Domain cluster: rep: ME53__YP_009182323__Diatraea_saccharalis_granulovirus__1675862__D239-309
D3 medium residues 72-188
PDB
Domain cluster: rep: me53_protein__YP_007250543__Thysanoplusia_orichalcea_nucleopolyhedrovirus__101850__D109-237
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06061.17 best Baculo_ME53 41.3 1.60e-10 90.6% 26.7%