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me53

Euk-Vir

Mamestra_brassicae_multiple_nucleopolyhedrovirus

me53__YP_009011072__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219

Identity

Accession:
YP_009011072 ↗
Protein ID:
me53
Kingdom:
euk

Quality

80.3 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Mamestra_brassicae_multiple_nucleopolyhedrovirus

TaxID: 78219

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-148
PDB
Domain cluster: rep: me53_protein__YP_007250543__Thysanoplusia_orichalcea_nucleopolyhedrovirus__101850__D109-237
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06061.17 best Baculo_ME53 102.7 3.40e-29 100.0% 35.4%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1totA00 3.30.60.90 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Zinc finger, ZZ-type 0.65 30.0 4.15e-01 82.2% 94.2%
3f2gA00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 45.0 3.73e-01 83.1% 57.1%
5eokA01 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.55 30.0 3.35e-01 84.7% 67.4%
1s6lA02 3.15.10.60 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Alkylmercury lyase 0.55 43.0 4.18e-01 83.1% 93.0%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3458107 376.1.1.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.71 33.0 4.68e-01 78.8% 94.5%
3578684 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.67 38.0 4.83e-01 90.7% 100.0%
3204200 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.60 34.0 4.29e-01 72.9% 98.5%
3261320 317.1.1.1 ↗ a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E 0.51 36.0 3.25e-01 73.7% 91.2%
4313859 377.1.1.11 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C 0.50 42.0 3.65e-01 100.0% 59.4%
D2 high residues 160-264
PDB
Domain cluster: rep: me-53__YP_009186707__Sucra_jujuba_nucleopolyhedrovirus__1563660__D191-238_262-289
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06061.17 best Baculo_ME53 86.9 2.30e-24 100.0% 31.2%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tupA02 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.73 42.0 4.38e-01 100.0% 62.5%
5ajiB03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 42.0 4.40e-01 99.0% 64.2%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.63 35.0 3.87e-01 98.1% 67.4%
4a2aA02 3.30.1490.110 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.62 45.0 4.93e-01 100.0% 93.1%
3onrJ00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.62 37.0 4.42e-01 100.0% 92.6%
2cc6A00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.59 36.0 4.42e-01 97.1% 100.0%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 4.68e-01 89.5% 89.7%
3q0hB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 4.62e-01 93.3% 84.1%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.57 51.0 4.34e-01 98.1% 71.3%
3pdgA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 4.06e-01 92.4% 80.2%
3u6yA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.56 35.0 3.66e-01 98.1% 67.7%
1y14D01 3.30.1490.120 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain 0.56 36.0 4.15e-01 100.0% 93.2%
6grqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 4.08e-01 89.5% 83.0%
2vxaA00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.55 35.0 4.16e-01 99.0% 100.0%
3gm8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 34.0 3.88e-01 91.4% 83.3%
1pm4A00 2.60.120.510 Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm 0.55 41.0 3.99e-01 100.0% 70.9%
2if7A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 4.33e-01 92.4% 87.5%
1ollA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 4.08e-01 94.3% 83.2%
3q8pB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 47.0 4.71e-01 98.1% 100.0%
1cczA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 4.18e-01 91.4% 88.2%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.53 43.0 3.45e-01 88.6% 92.4%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.53 46.0 3.85e-01 99.0% 54.8%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.52 46.0 3.59e-01 98.1% 55.4%
1c0aA03 3.30.1360.30 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › GAD-like domain 0.52 41.0 3.64e-01 100.0% 59.3%
2vy0B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 46.0 3.45e-01 100.0% 69.2%
4zxhA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.50 35.0 3.05e-01 73.3% 50.6%
2oxgC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 4.05e-01 93.3% 86.1%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3480319 304.113.1.1 ↗ a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain › GATase_2 0.66 42.0 4.18e-01 98.1% 61.8%
3576334 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.64 37.0 4.21e-01 93.3% 75.0%
4937751 304.8.1.82 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 0.62 41.0 3.95e-01 99.0% 59.2%
4120506 243.11.1.4 ↗ a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › PF29632 0.60 26.0 3.00e-01 88.6% 51.2%
4944072 302.1.1.0 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.59 45.0 4.65e-01 99.0% 85.0%
3408444 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.59 49.0 4.90e-01 90.5% 90.0%
3841071 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.58 47.0 4.21e-01 93.3% 62.1%
3188360 221.7.1.3 ↗ a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › UAE_UbL 0.57 41.0 3.95e-01 95.2% 65.0%
413000 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.57 46.0 4.62e-01 93.3% 84.1%
5040514 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 44.0 4.72e-01 96.2% 98.9%
4488199 11.1.1.1249 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27332 0.56 48.0 4.29e-01 94.3% 70.9%
3840244 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.56 44.0 4.44e-01 90.5% 83.8%
3868286 12.1.1.61 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Mucin2_WxxW 0.55 41.0 4.46e-01 99.0% 100.0%
5056886 219.1.1.51 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.55 47.0 3.92e-01 100.0% 85.9%
4855956 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.55 46.0 4.57e-01 97.1% 87.0%
3424134 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.54 49.0 4.44e-01 100.0% 94.5%
3628180 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.54 47.0 4.21e-01 99.0% 91.6%
5067499 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.53 33.0 3.11e-01 100.0% 51.5%
3341380 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.53 47.0 4.21e-01 100.0% 95.3%
7413 219.1.1.24 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Herpes_teg_N 0.52 46.0 3.59e-01 98.1% 55.2%
3941935 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.52 45.0 4.46e-01 99.0% 88.7%
3671864 10.32.1.76 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BetaGal_gal-bd 0.52 38.0 3.83e-01 96.2% 77.1%
4015771 210.1.4.0 ↗ a+b four layers › Ntn/PP2C › Ntn › (Glycosyl)asparaginase 0.52 40.0 2.81e-01 82.9% 46.9%
3918813 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.51 39.0 3.62e-01 99.0% 63.0%
1161758 10.4.1.2 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › C3_CUB2 0.51 38.0 3.73e-01 96.2% 72.8%
3498315 323.1.1.8 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › WS_DGAT_cat 0.50 36.0 3.12e-01 75.2% 47.4%
3491153 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 45.0 3.92e-01 99.0% 65.8%
D3 high residues 290-353
PDB
Domain cluster: rep: ME53__YP_009182323__Diatraea_saccharalis_granulovirus__1675862__D239-309
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06061.17 best Baculo_ME53 69.7 3.80e-19 90.6% 17.9%