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me53

Euk-Vir

Oxyplax_ochracea_nucleopolyhedrovirus

me53__YP_009666544__Oxyplax_ochracea_nucleopolyhedrovirus__2083176

Identity

Accession:: YP_009666544 ↗
Protein ID:: me53
Kingdom:: euk

Quality

75.7 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Oxyplax_ochracea_nucleopolyhedrovirus

TaxID: 2083176

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 73-208

PDB

Domain cluster: rep: me53_protein__YP_007250543__Thysanoplusia_orichalcea_nucleopolyhedrovirus__101850__D109-237

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06061.17 best	Baculo_ME53	154.4	6.30e-45	100.0%	40.6%

D2 high residues 210-326

PDB

Domain cluster: rep: ME53__YP_009345870__Mythimna_unipuncta_granulovirus_B__2169746__D122-211

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06061.17 best	Baculo_ME53	63.5	2.90e-17	99.2%	27.9%

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2fmaA00	3.30.1490.140	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Amyloidogenic glycoprotein, copper-binding domain	0.71	37.0	4.97e-01	97.4%	100.0%
3sxlA02	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.63	32.0	4.30e-01	94.9%	100.0%
2b78A03	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.61	35.0	2.91e-01	95.7%	30.8%
1et9A01	3.10.20.120	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.57	44.0	4.55e-01	94.0%	86.4%
2j1aA00	2.60.120.260	Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like	0.57	40.0	3.78e-01	96.6%	59.6%
7jooC01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.57	41.0	4.50e-01	88.9%	90.7%
2bkyX00	3.30.110.20	Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain	0.55	30.0	3.41e-01	98.3%	69.8%
2if7A01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.54	40.0	4.24e-01	91.5%	87.5%
3omlA03	3.10.129.10	Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase	0.54	39.0	3.06e-01	76.1%	100.0%
1unnC00	3.30.1490.100	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain	0.54	42.0	4.31e-01	95.7%	88.3%
1f35A00	2.60.120.390	Mainly Beta › Sandwich › Jelly Rolls › Olfactory marker	0.53	43.0	3.86e-01	96.6%	63.0%
3q0hB00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	37.0	3.90e-01	95.7%	83.2%
3uxfA02	2.60.40.740	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.51	45.0	3.98e-01	100.0%	68.1%
2wngA03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.50	33.0	3.74e-01	92.3%	88.5%
1opoC01	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.50	44.0	4.01e-01	100.0%	98.2%
2oxgC00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.50	37.0	3.94e-01	96.6%	88.1%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5081638	256.1.1.1 ↗	a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease	0.66	37.0	4.52e-01	100.0%	90.0%
5045594	11.1.4.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like	0.62	36.0	3.80e-01	87.2%	62.9%
5040514	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.61	45.0	5.03e-01	94.9%	98.9%
4937751	304.8.1.82 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325	0.60	37.0	3.71e-01	99.1%	60.0%
5043214	304.8.1.82 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325	0.60	34.0	3.93e-01	98.3%	76.5%
5042718	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.59	38.0	4.53e-01	84.6%	100.0%
4135543	221.1.1.17 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C	0.59	48.0	4.84e-01	97.4%	86.6%
5056376	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.59	35.0	4.08e-01	96.6%	85.0%
3592899	4081.1.1.0 ↗	beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related	0.57	48.0	3.86e-01	100.0%	48.4%
3965161	304.6.1.1 ↗	a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C	0.55	35.0	2.69e-01	97.4%	28.8%
3266479	859.1.1.4 ↗	a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › ATG13	0.53	42.0	3.60e-01	84.6%	67.4%
4021465	10.2.1.0 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins)	0.52	46.0	4.19e-01	100.0%	72.3%
4322566	304.44.1.1 ↗	a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10	0.52	35.0	3.84e-01	99.1%	84.2%
3905531	10.8.1.1 ↗	beta sandwiches › jelly-roll › Olfactory marker protein › Olfactory marker protein › Olfactory_mark	0.52	42.0	3.89e-01	96.6%	68.2%
4199516	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.50	35.0	3.70e-01	91.5%	80.0%
3237716	11.10.1.6 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH	0.50	46.0	4.33e-01	100.0%	92.1%

D3 high residues 342-409

PDB

Domain cluster: rep: ME53__YP_009182323__Diatraea_saccharalis_granulovirus__1675862__D239-309

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06061.17 best	Baculo_ME53	80.7	1.70e-22	97.1%	21.5%