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membrane-associated_protein
Euk-VirLloviu_cuevavirus
membrane-associated_protein__YP_004928142__Lloviu_cuevavirus__1513237
Identity
- Accession:
- YP_004928142 ↗
- Protein ID:
- membrane-associated_protein
- Kingdom:
- euk
Quality
72.2
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Filoviridae›
Cuevavirus›
Cuevavirus_lloviuense
TaxID: 1513237
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 51-88_158-250
Domain cluster:
rep: membrane-associated_protein__YP_009513281__Bombali_ebolavirus__2010960__D51-88_159-251
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06389.17 best | Filo_VP24 | 91.3 | 1.00e-25 | 72.5% | 38.6% |
| PF06389.17 | Filo_VP24 | 49.8 | 4.60e-13 | 31.3% | 15.3% |
D2
medium
residues 89-157
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06389.17 best | Filo_VP24 | 72.2 | 6.90e-20 | 100.0% | 25.9% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4cpgA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.58 | 48.0 | 4.88e-01 | 97.1% | 89.9% |
| 1vnsA01 | 1.20.144.10 | Mainly Alpha › Up-down Bundle › Vanadium-containing Chloroperoxidase; domain 1 › Phosphatidic acid phosphatase type 2/haloperoxidase | 0.57 | 49.0 | 3.76e-01 | 100.0% | 69.1% |
| 4l3tA03 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.54 | 47.0 | 3.35e-01 | 100.0% | 58.4% |
| 3b0xA01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.54 | 46.0 | 4.32e-01 | 98.6% | 93.1% |
| 1y7yA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.51 | 44.0 | 4.43e-01 | 100.0% | 98.6% |
| 1wu3I00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 45.0 | 3.44e-01 | 100.0% | 57.8% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 185604 | 3400.1.1.1 ↗ | a+b complex topology › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Filo_VP24 | 0.90 | 77.0 | 5.22e-01 | 100.0% | 28.9% |
| 1148074 | 3400.1.1.1 ↗ | a+b complex topology › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Filo_VP24 | 0.86 | 80.0 | 5.40e-01 | 100.0% | 31.5% |
| 4017064 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.68 | 61.0 | 4.58e-01 | 100.0% | 52.9% |
| 3606689 | 1189.1.1.0 ↗ | alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor | 0.64 | 54.0 | 3.63e-01 | 92.8% | 75.3% |
| 3863109 | 4044.1.1.16 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › AMH_N | 0.58 | 47.0 | 4.44e-01 | 100.0% | 74.1% |
| 4061582 | 632.7.1.32 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › Med15_M | 0.57 | 51.0 | 4.98e-01 | 98.6% | 90.7% |
| 5032080 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.57 | 47.0 | 4.07e-01 | 92.8% | 63.5% |
| 5072210 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.55 | 43.0 | 4.13e-01 | 91.3% | 78.8% |
| 3796707 | 2485.1.1.17 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › OST3_OST6 | 0.54 | 46.0 | 3.11e-01 | 100.0% | 32.8% |
| 4025615 | 589.1.1.0 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain | 0.54 | 46.0 | 3.61e-01 | 95.7% | 73.1% |
| 4874340 | 5054.1.1.1 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan | 0.50 | 41.0 | 3.62e-01 | 100.0% | 60.4% |