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membrane-associated_protein

Euk-Vir

Bombali_ebolavirus

membrane-associated_protein__YP_009513281__Bombali_ebolavirus__2010960

Identity

Accession:: YP_009513281 ↗
Protein ID:: membrane-associated_protein
Kingdom:: euk

Quality

72.9 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Filoviridae› Orthoebolavirus› Bombali_virus

TaxID: 2010960

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 21-50_89-158

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06389.17 best	Filo_VP24	94.7	9.20e-27	72.0%	27.1%
PF06389.17	Filo_VP24	36.9	3.90e-09	32.0%	13.0%

CATH (29)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7k3zG01	3.50.7.10	Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL	0.65	45.0	3.46e-01	71.0%	76.5%
6lw5A01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.63	50.0	3.59e-01	87.0%	82.1%
4cpgA00	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.61	37.0	4.37e-01	71.0%	87.0%
3llkA01	1.20.120.1960	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › QSOX sulfhydryl oxidase domain	0.61	46.0	4.68e-01	93.0%	82.7%
3i2fA02	1.10.3020.10	Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain)	0.60	41.0	4.24e-01	86.0%	73.7%
4d8mA01	1.20.190.10	Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain	0.60	43.0	3.30e-01	74.0%	84.7%
3kp9A01	1.20.1440.130	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain	0.59	41.0	3.55e-01	72.0%	75.3%
1aepA00	1.20.120.20	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein	0.59	54.0	4.66e-01	100.0%	88.2%
3hiuD00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.58	44.0	3.81e-01	79.0%	91.4%
1uurA01	1.20.58.240	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1	0.58	42.0	4.09e-01	74.0%	86.4%
8hk0B03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.58	41.0	3.66e-01	73.0%	73.2%
4l8iB00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.57	40.0	3.88e-01	73.0%	84.8%
3bt5A00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.57	42.0	3.67e-01	78.0%	96.7%
2v0oB00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.56	42.0	3.07e-01	79.0%	83.0%
3gzkA02	1.50.10.10	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.55	44.0	2.91e-01	87.0%	43.6%
6xxvC00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.55	39.0	3.79e-01	74.0%	83.8%
1r9dA01	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.54	46.0	2.76e-01	93.0%	38.8%
4oydB00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.54	38.0	3.65e-01	73.0%	82.1%
3a06B03	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.54	32.0	3.40e-01	96.0%	65.9%
3axjB02	1.20.58.200	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2	0.54	38.0	4.09e-01	74.0%	94.1%
3behB01	1.20.120.540	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels	0.53	44.0	4.20e-01	91.0%	84.6%
2nvnA00	2.30.31.10	Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A	0.53	36.0	3.49e-01	72.0%	94.2%
4adnA01	1.20.1280.250	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.53	37.0	3.97e-01	90.0%	88.2%
6mh4A03	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.52	29.0	3.18e-01	100.0%	64.6%
3h5aD01	3.90.930.70	Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 ›	0.52	38.0	3.98e-01	91.0%	87.5%
1q6aA00	1.10.1240.30	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain	0.52	36.0	3.57e-01	75.0%	68.2%
1fx8A00	1.20.1080.10	Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein.	0.51	45.0	3.39e-01	98.0%	83.5%
3axjB01	1.20.58.190	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1	0.51	35.0	3.08e-01	71.0%	50.3%
1fc6A01	3.30.750.44	Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA ›	0.50	34.0	3.49e-01	70.0%	96.9%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
185604	3400.1.1.1 ↗	a+b complex topology › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Filo_VP24	0.89	85.0	6.35e-01	100.0%	61.9%
1148074	3400.1.1.1 ↗	a+b complex topology › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Filo_VP24	0.88	84.0	6.25e-01	100.0%	62.6%
4070520	4070.1.1.2 ↗	alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50	0.69	49.0	3.76e-01	72.0%	49.8%
3689164	219.3.1.1 ↗	a+b complex topology › Cysteine proteinases-like › AnkH, inserted middle domain › AnkH, inserted middle domain › DUF6606	0.65	53.0	3.60e-01	87.0%	73.3%
3617417	3065.1.1.0 ↗	alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins	0.64	52.0	4.78e-01	88.0%	100.0%
3710934	633.2.1.0 ↗	alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein	0.62	42.0	4.48e-01	70.0%	81.1%
4017064	170.1.1.0 ↗	alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C	0.60	49.0	4.14e-01	89.0%	78.8%
3227811	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.58	43.0	3.74e-01	78.0%	62.6%
3744818	101.1.1.213 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HRI2_3H	0.57	31.0	3.52e-01	82.0%	69.3%
2530252	2500.1.1.3 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › PFL-like	0.57	48.0	2.87e-01	91.0%	44.8%
4341991	2500.1.1.0 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel	0.56	48.0	2.80e-01	91.0%	37.8%
3396058	3361.1.1.1 ↗	alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › RAC_head	0.53	34.0	3.57e-01	80.0%	72.2%
2983210	6004.1.1.2 ↗	extended segments › FATC domain › FATC domain › FATC domain › ETC_C1_NDUFA5	0.52	42.0	4.04e-01	88.0%	75.4%
4255175	5081.1.1.1 ↗	alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid	0.52	47.0	3.47e-01	100.0%	82.3%
4260426	3718.1.1.1 ↗	alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT	0.51	33.0	3.35e-01	72.0%	66.0%
3270283	609.1.1.1 ↗	alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › PARP_reg	0.50	35.0	3.19e-01	71.0%	72.6%

D2 medium residues 51-88_159-251

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06389.17 best	Filo_VP24	124.2	8.90e-36	73.3%	39.3%
PF06389.17	Filo_VP24	61.8	1.00e-16	29.8%	14.1%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4exrA01	3.10.450.40	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.66	32.0	4.05e-01	78.6%	76.5%
1fr3A00	2.40.50.100	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	0.56	25.0	3.42e-01	71.8%	80.6%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
185604	3400.1.1.1 ↗	a+b complex topology › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Filo_VP24	0.92	77.0	6.24e-01	85.5%	80.7%
1148074	3400.1.1.1 ↗	a+b complex topology › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Filo_VP24	0.84	71.0	5.74e-01	86.3%	78.4%
415	2.4.1.1 ↗	beta barrels › OB-fold › MOP-like › MOP-like › TOBE	0.56	25.0	3.42e-01	71.8%	80.6%
3490231	5.1.4.37 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160	0.54	40.0	2.89e-01	75.6%	42.0%
3709800	330.1.1.0 ↗	a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like	0.53	28.0	3.19e-01	74.0%	67.4%
3276895	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.52	41.0	2.87e-01	82.4%	91.0%
3337961	5.1.3.144 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like	0.52	36.0	2.63e-01	77.9%	26.7%
3441395	5.1.3.159 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7595	0.51	36.0	2.77e-01	74.0%	47.1%
3695943	12.3.1.0 ↗	beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich	0.50	36.0	2.79e-01	74.0%	83.1%