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membrane_glycoprotein_M
Euk-VirDonggang_virus
membrane_glycoprotein_M__YP_009259527__Donggang_virus__985683
Identity
- Accession:
- YP_009259527 ↗
- Protein ID:
- membrane_glycoprotein_M
- Kingdom:
- euk
Quality
71.7
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Flasuviricetes›
Amarillovirales›
Flaviviridae›
Orthoflavivirus›
Donggang_virus
TaxID: 985683
Cluster
View cluster (20 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 25-71
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01004.25 best | Flavi_M | 44.3 | 1.70e-11 | 100.0% | 59.5% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vk9A04 | 1.10.274.80 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › | 0.84 | 57.0 | 4.31e-01 | 70.2% | 32.7% |
| 3j27B00 | 1.10.8.970 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Flavivirus envelope glycoprotein M-like | 0.84 | 74.0 | 6.42e-01 | 100.0% | 65.3% |
| 1f05A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.81 | 68.0 | 4.07e-01 | 95.7% | 14.9% |
| 4j0eA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.80 | 56.0 | 3.63e-01 | 74.5% | 18.3% |
| 1pwkA00 | 3.30.740.10 | Alpha Beta › 2-Layer Sandwich › Protein Inhibitor Of Neuronal Nitric Oxide Synthase › Protein Inhibitor Of Neuronal Nitric Oxide Synthase; | 0.80 | 57.0 | 4.60e-01 | 76.6% | 42.9% |
| 2k0nA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.74 | 56.0 | 4.69e-01 | 85.1% | 62.4% |
| 6lcuA02 | 1.10.10.470 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 | 0.67 | 57.0 | 4.43e-01 | 97.9% | 100.0% |
| 3cegA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.63 | 46.0 | 2.82e-01 | 76.6% | 62.0% |
| 2ffjA01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.63 | 47.0 | 4.53e-01 | 87.2% | 75.0% |
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 39.0 | 3.48e-01 | 89.4% | 46.3% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.60 | 41.0 | 3.78e-01 | 70.2% | 65.5% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.59 | 44.0 | 4.04e-01 | 91.5% | 62.5% |
| 2dwkA00 | 1.20.58.900 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain | 0.58 | 42.0 | 3.01e-01 | 80.9% | 71.4% |
| 2vzbB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.55 | 42.0 | 2.87e-01 | 83.0% | 68.9% |
| 2glzA00 | 3.30.1330.130 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › | 0.53 | 43.0 | 3.08e-01 | 89.4% | 82.6% |
| 2aj6A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 42.0 | 3.12e-01 | 87.2% | 45.8% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4409246 | 225.1.1.4 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HWE_HK | 0.90 | 62.0 | 3.91e-01 | 72.3% | 17.6% |
| 4402607 | 605.1.1.142 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HWE_HK | 0.89 | 62.0 | 5.64e-01 | 72.3% | 60.0% |
| 4890953 | 864.1.1.1 ↗ | a+b two layers › DLC › DLC › DLC › Dynein_light | 0.89 | 64.0 | 5.04e-01 | 76.6% | 41.8% |
| 2720280 | 3544.1.1.1 ↗ | extended segments › Small envelope protein M › Small envelope protein M › Small envelope protein M › Flavi_M | 0.88 | 76.0 | 7.53e-01 | 97.9% | 92.0% |
| 3744818 | 101.1.1.213 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HRI2_3H | 0.86 | 59.0 | 5.01e-01 | 72.3% | 48.0% |
| 3471144 | 864.1.1.0 ↗ | a+b two layers › DLC › DLC › DLC | 0.81 | 61.0 | 4.94e-01 | 80.9% | 44.7% |
| 3497368 | 864.1.1.1 ↗ | a+b two layers › DLC › DLC › DLC › Dynein_light | 0.78 | 58.0 | 4.75e-01 | 80.9% | 44.7% |
| 3242655 | 7023.1.1.0 ↗ | alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein | 0.76 | 52.0 | 4.01e-01 | 72.3% | 34.3% |
| 3574388 | 103.9.1.0 ↗ | alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain | 0.71 | 62.0 | 5.08e-01 | 100.0% | 55.6% |
| 3596791 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.62 | 50.0 | 3.38e-01 | 97.9% | 46.7% |
| 2791544 | 568.1.1.0 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related | 0.59 | 49.0 | 4.76e-01 | 97.9% | 100.0% |