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membrane_glycoprotein_US3
Euk-VirHuman_herpesvirus_5
membrane_glycoprotein_US3__YP_002608308__Human_herpesvirus_5__10359
Identity
- Accession:
- YP_002608308 ↗
- Protein ID:
- membrane_glycoprotein_US3
- Kingdom:
- euk
Quality
70.6
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Cytomegalovirus›
Human_betaherpesvirus_5
TaxID: 10359
Cluster
View cluster (41 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-20_134-185
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05963.18 best | Cytomega_US3 | 81.5 | 9.90e-23 | 78.6% | 24.5% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.81 | 55.0 | 5.62e-01 | 70.0% | 73.1% |
| 1uruA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.80 | 54.0 | 3.78e-01 | 70.0% | 68.4% |
| 6v88A00 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.76 | 50.0 | 4.22e-01 | 71.4% | 41.4% |
| 4lwsA00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.72 | 49.0 | 4.33e-01 | 70.0% | 53.0% |
| 2ozbB01 | 1.10.287.4070 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 61.0 | 4.93e-01 | 100.0% | 92.4% |
| 7y4rB01 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.65 | 50.0 | 4.31e-01 | 81.4% | 61.3% |
| 4x5mA00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.64 | 50.0 | 4.72e-01 | 85.7% | 83.7% |
| 2cwqA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.63 | 46.0 | 3.84e-01 | 78.6% | 50.8% |
| 1uaaA02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.60 | 47.0 | 4.66e-01 | 85.7% | 97.3% |
| 1konA01 | 1.10.10.200 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain | 0.58 | 41.0 | 4.15e-01 | 72.9% | 75.0% |
| 4qgpB00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.56 | 46.0 | 4.00e-01 | 90.0% | 71.0% |
| 3rfwA02 | 6.10.140.970 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 47.0 | 4.39e-01 | 100.0% | 78.3% |
| 3rgcA01 | 1.10.4030.10 | Mainly Alpha › Orthogonal Bundle › Triger factor/SurA peptide-binding fold › Porin chaperone SurA, peptide-binding domain | 0.53 | 49.0 | 3.61e-01 | 100.0% | 70.6% |
| 2hoqA02 | 1.10.150.520 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.51 | 38.0 | 3.67e-01 | 80.0% | 87.3% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3914660 | 604.1.1.95 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › KIAA1755_C | 0.87 | 59.0 | 5.49e-01 | 70.0% | 57.6% |
| 3802185 | 192.8.1.359 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF641 | 0.86 | 58.0 | 5.89e-01 | 71.4% | 70.0% |
| 3570499 | 604.1.1.95 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › KIAA1755_C | 0.86 | 62.0 | 5.53e-01 | 75.7% | 95.8% |
| 3525928 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.83 | 59.0 | 4.59e-01 | 74.3% | 37.1% |
| 3750000 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.75 | 54.0 | 4.73e-01 | 75.7% | 94.3% |
| 4963289 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.73 | 49.0 | 3.57e-01 | 70.0% | 25.8% |
| 3629922 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.70 | 48.0 | 4.31e-01 | 71.4% | 80.0% |
| 3477749 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.67 | 45.0 | 4.53e-01 | 71.4% | 70.0% |
| 3560308 | 515.1.1.0 ↗ | alpha arrays › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain | 0.66 | 50.0 | 4.27e-01 | 81.4% | 69.6% |
D2
high
residues 37-132