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membrane_glycoprotein

Euk-Vir

Rice_hoja_blanca_tenuivirus

membrane_glycoprotein__YP_009449442__Rice_hoja_blanca_tenuivirus__12332

Identity

Accession:: YP_009449442 ↗
Protein ID:: membrane_glycoprotein
Kingdom:: euk

Quality

58.8 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Phenuiviridae› Tenuivirus› Tenuivirus_oryzalbae

TaxID: 12332

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 182-236

PDB

D2 medium residues 431-447_512-600_623-659

PDB

Domain cluster: rep: glycoprotein_precursor__YP_009305139__Wuhan_horsefly_Virus__1608139__D418-436_504-607_628-645

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06656.16 best	Tenui_PVC2	99.8	1.50e-28	68.5%	11.9%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ebtA00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.53	27.0	2.88e-01	99.3%	53.4%
1tuhA00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.53	28.0	2.93e-01	98.6%	55.7%
2gaiA03	2.70.20.10	Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3	0.51	29.0	3.09e-01	100.0%	61.8%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4216850	809.1.1.1 ↗	a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › SmpA_OmlA	0.57	19.0	2.48e-01	94.4%	44.7%
4013487	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.54	26.0	2.91e-01	92.3%	56.4%

D3 medium residues 448-511_601-622

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06656.16 best	Tenui_PVC2	86.8	1.30e-24	97.7%	10.2%

CATH (21)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ebeA00	3.30.70.2290	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF3208)	0.62	44.0	4.13e-01	74.4%	61.3%
3ne5C02	2.40.30.170	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain	0.60	42.0	3.97e-01	72.1%	61.8%
1ok8A03	3.30.387.10	Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 3 › Viral Envelope Glycoprotein, domain 3	0.58	46.0	4.69e-01	100.0%	91.4%
1bdfA01	3.30.1360.10	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit	0.56	41.0	3.85e-01	81.4%	63.2%
2gysA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.55	38.0	3.76e-01	73.3%	66.3%
3q2uA00	3.40.33.10	Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP	0.55	44.0	3.46e-01	88.4%	63.7%
2vxaA00	3.30.1660.10	Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin	0.54	37.0	4.11e-01	73.3%	100.0%
3dasA00	2.120.10.30	Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain	0.53	37.0	2.53e-01	72.1%	99.7%
5d4nC00	3.30.70.120	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.53	41.0	3.96e-01	83.7%	95.9%
4fqpA03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.53	31.0	3.08e-01	83.7%	53.3%
5h80B03	3.30.470.20	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain	0.53	37.0	2.72e-01	73.3%	71.7%
3m86A00	2.60.40.2020	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.53	39.0	3.65e-01	80.2%	71.2%
1w96C04	3.30.470.20	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain	0.52	40.0	2.92e-01	83.7%	28.1%
1p1lA00	3.30.70.120	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	40.0	3.81e-01	82.6%	99.0%
4n2oA00	2.60.40.680	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.52	46.0	3.52e-01	97.7%	52.3%
1v8cA02	3.30.1370.80	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain	0.52	38.0	3.96e-01	81.4%	83.7%
3e05B00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.51	36.0	2.75e-01	87.2%	32.3%
2bg9A01	2.70.170.10	Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain	0.51	38.0	2.92e-01	80.2%	35.2%
1cwvA03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	33.0	3.20e-01	83.7%	55.9%
5xzqF00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	39.0	3.69e-01	83.7%	71.8%
3uiuA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.50	35.0	3.38e-01	70.9%	62.9%

ECOD (21)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3057868	5090.1.1.3 ↗	beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Alpha_E1_glycop	0.60	41.0	4.07e-01	74.4%	66.7%
4871888	226.1.1.4 ↗	a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2	0.57	38.0	3.99e-01	74.4%	74.1%
4993856	242.1.1.0 ↗	a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases	0.55	37.0	3.49e-01	81.4%	56.2%
3598240	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.55	40.0	3.67e-01	81.4%	60.0%
3699728	878.1.1.0 ↗	a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677	0.54	40.0	3.68e-01	80.2%	78.3%
3823835	304.4.1.78 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF7036	0.54	40.0	3.80e-01	79.1%	69.5%
3481772	331.9.1.4 ↗	a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla	0.54	41.0	3.65e-01	81.4%	80.5%
3478824	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.54	41.0	3.44e-01	81.4%	52.4%
3597124	10.15.1.1 ↗	beta sandwiches › jelly-roll › Smp-1-like › Smp-1-like › DUF1935	0.53	44.0	3.86e-01	100.0%	60.0%
3930230	331.4.1.5 ↗	a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1_BRSK	0.53	39.0	3.53e-01	76.7%	77.4%
3332191	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.53	46.0	3.66e-01	100.0%	74.6%
3925170	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.53	36.0	3.35e-01	72.1%	60.0%
3917015	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.52	40.0	3.54e-01	82.6%	60.8%
5050618	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.52	46.0	3.97e-01	100.0%	88.6%
4629783	242.1.1.7 ↗	a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3	0.52	41.0	3.69e-01	84.9%	67.5%
3940520	223.2.1.34 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2	0.52	45.0	3.80e-01	100.0%	81.3%
4943663	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.52	46.0	3.83e-01	100.0%	89.0%
3695778	331.4.1.0 ↗	a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1	0.51	39.0	3.30e-01	81.4%	85.5%
3276203	223.1.1.13 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3	0.51	39.0	3.38e-01	80.2%	80.8%
4566947	223.1.1.2 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › PAS	0.51	39.0	3.32e-01	86.0%	87.5%
3684352	246.3.1.0 ↗	a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like	0.50	38.0	2.92e-01	81.4%	97.6%

D4 medium residues 687-766

PDB