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membrane_glycoprotein_precursor_M

Euk-Vir

Chaoyang_virus

membrane_glycoprotein_precursor_M__YP_009259654__Chaoyang_virus__631267

Identity

Accession:: YP_009259654 ↗
Protein ID:: membrane_glycoprotein_precursor_M
Kingdom:: euk

Quality

75.1 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Flasuviricetes› Amarillovirales› Flaviviridae› Orthoflavivirus› Chaoyang_virus

TaxID: 631267

Cluster

View cluster (15 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-81

PDB

Domain cluster: rep: propep__YP_009553725__Kampung_Karu_virus__2045186__D2-68

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01570.23 best	Flavi_propep	83.6	1.10e-23	96.2%	84.1%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3c5xC00	2.60.260.50	Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Flavivirus polyprotein propeptide domain	0.92	86.0	8.58e-01	100.0%	97.5%
4bdxA00	2.10.25.10	Mainly Beta › Ribbon › Laminin › Laminin	0.63	32.0	3.18e-01	88.7%	44.6%
2wj6A01	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.59	41.0	3.09e-01	73.8%	44.1%
2fukA00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.57	48.0	3.57e-01	96.2%	50.0%
2jwyA01	2.60.40.1620	Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like	0.51	41.0	3.57e-01	92.5%	86.7%
2zovA00	3.30.1330.60	Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain	0.50	35.0	2.91e-01	76.2%	60.2%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2720279	67.1.1.2 ↗	beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › Flavi_propep	0.95	91.0	8.28e-01	100.0%	79.2%
2721993	67.1.1.2 ↗	beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › Flavi_propep	0.95	83.0	8.46e-01	97.5%	94.8%
2410038	67.1.1.2 ↗	beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › Flavi_propep	0.91	83.0	8.34e-01	100.0%	96.2%
5053224	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.56	37.0	4.06e-01	80.0%	90.0%
3940520	223.2.1.34 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2	0.56	40.0	3.31e-01	77.5%	52.9%
3969735	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.54	31.0	3.30e-01	100.0%	62.9%
3598882	4086.1.1.0 ↗	a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like	0.52	33.0	3.31e-01	88.7%	62.5%
3275859	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.51	43.0	3.50e-01	97.5%	85.5%
3685389	223.2.1.23 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like › NPR3	0.51	38.0	2.99e-01	81.2%	65.4%
4400677	244.3.1.4 ↗	a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › Lip_prot_lig_C	0.51	33.0	3.26e-01	76.2%	62.4%
3931538	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.51	37.0	3.43e-01	90.0%	60.0%
3930154	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.50	38.0	3.06e-01	81.2%	61.8%

D2 high residues 112-167

PDB

Domain cluster: rep: matrix_protein_M__NP_776001__Yellow_fever_virus__11089__D24-74

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01004.25 best	Flavi_M	61.8	5.60e-17	100.0%	75.7%