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membrane_protein_A32

Euk-Vir

Saimiriine_betaherpesvirus_4

membrane_protein_A32__YP_004940299__Saimiriine_betaherpesvirus_4__1535247

Identity

Accession:
YP_004940299 ↗
Protein ID:
membrane_protein_A32
Kingdom:
euk

Quality

55.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 101-172
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25728.2 best US29 99.0 3.90e-28 100.0% 21.6%
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.75 56.0 4.75e-01 84.7% 50.0%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.70 49.0 4.12e-01 73.6% 44.4%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 42.0 4.15e-01 72.2% 59.0%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 47.0 4.08e-01 79.2% 49.5%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 46.0 4.39e-01 77.8% 64.3%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 47.0 4.09e-01 80.6% 51.8%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 43.0 3.81e-01 81.9% 49.5%
2o3oA01 2.40.128.690 Mainly Beta › Beta Barrel › Lipocalin › YycH protein, domain 3-like 0.63 45.0 3.77e-01 75.0% 45.5%
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 44.0 3.85e-01 75.0% 92.8%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.06e-01 88.9% 51.9%
1gkuB07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.61 44.0 3.92e-01 76.4% 75.5%
1fmbA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.61 44.0 3.99e-01 79.2% 73.1%
4w78G00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 44.0 3.40e-01 77.8% 78.5%
1h7zA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.60 53.0 3.92e-01 100.0% 87.4%
4nzrM02 2.160.20.180 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.59 41.0 3.12e-01 73.6% 56.0%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 4.05e-01 80.6% 70.8%
2be3B01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.59 45.0 3.74e-01 84.7% 97.0%
5n9bA01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.58 46.0 3.78e-01 88.9% 67.9%
1fvzA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 42.0 2.91e-01 80.6% 34.2%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 3.47e-01 70.8% 97.1%
6fgjA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 45.0 3.61e-01 87.5% 97.3%
1n2bB02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.56 42.0 3.78e-01 81.9% 98.1%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.56 43.0 3.85e-01 86.1% 78.5%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.56 40.0 3.47e-01 76.4% 92.0%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 44.0 3.06e-01 88.9% 36.2%
3hk4A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 3.66e-01 84.7% 63.6%
6secA03 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 38.0 2.60e-01 73.6% 28.9%
1bxoA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.53 40.0 3.16e-01 83.3% 62.4%
2b39A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 40.0 3.40e-01 81.9% 96.8%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 40.0 3.31e-01 84.7% 57.7%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.54e-01 88.9% 62.8%
3luqB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 40.0 3.51e-01 84.7% 81.6%
1i7dA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.52 40.0 3.36e-01 88.9% 64.5%
3b8lA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.28e-01 86.1% 56.0%
3mnmA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.52 36.0 3.19e-01 75.0% 93.8%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 37.0 3.25e-01 79.2% 50.5%
3vhxF00 2.60.40.4330 Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain 0.51 35.0 3.15e-01 70.8% 89.2%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.27e-01 94.4% 72.7%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.35e-01 87.5% 83.7%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 43.0 3.06e-01 98.6% 55.4%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 36.0 2.46e-01 75.0% 32.5%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 35.0 3.46e-01 76.4% 67.9%
4inaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 36.0 2.67e-01 75.0% 88.3%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3670792 243.3.1.67 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Phytochelatin_C 0.73 49.0 5.17e-01 77.8% 78.5%
3863194 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.71 45.0 3.69e-01 70.8% 35.4%
3472797 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.71 52.0 4.11e-01 79.2% 39.3%
5041097 6043.1.1.0 a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.69 43.0 4.78e-01 73.6% 81.8%
3693249 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.68 47.0 3.90e-01 72.2% 40.8%
3558388 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.68 44.0 4.63e-01 70.8% 73.8%
4965392 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.66 39.0 4.45e-01 72.2% 82.0%
377 2.1.1.90 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › ssDBP 0.66 42.0 4.15e-01 72.2% 59.0%
3251342 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.66 48.0 4.08e-01 79.2% 46.7%
4032024 2.1.1.335 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29902 0.65 46.0 4.28e-01 76.4% 58.9%
3948467 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 41.0 4.28e-01 76.4% 70.8%
5009916 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.65 47.0 4.24e-01 79.2% 74.3%
3433312 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.64 46.0 3.86e-01 76.4% 78.4%
3222737 207.1.1.127 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PHA-1 0.64 56.0 3.41e-01 100.0% 49.2%
5030532 1.1.1.8 beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.63 45.0 3.93e-01 76.4% 69.6%
5005180 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.63 49.0 4.04e-01 83.3% 81.6%
3435224 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.63 43.0 4.46e-01 76.4% 78.5%
3251381 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.62 43.0 4.54e-01 72.2% 80.0%
4946870 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.62 46.0 3.84e-01 80.6% 65.9%
3881440 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.62 46.0 3.86e-01 79.2% 80.0%
4992338 1.1.1.18 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.62 45.0 4.08e-01 79.2% 75.2%
4933116 1.1.1.8 beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.62 45.0 3.94e-01 79.2% 69.6%
3590584 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.62 45.0 3.69e-01 77.8% 77.8%
3966797 283.2.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.62 44.0 3.81e-01 76.4% 94.8%
3396462 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 42.0 4.41e-01 72.2% 78.5%
5032197 1.1.1.18 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.61 44.0 3.86e-01 76.4% 70.0%
2494924 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.61 41.0 4.02e-01 72.2% 64.1%
4865157 243.1.1.17 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.61 45.0 3.84e-01 79.2% 49.1%
4933942 1.1.1.8 beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.61 45.0 3.91e-01 80.6% 71.3%
4969842 1.1.1.18 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.61 44.0 3.91e-01 80.6% 73.0%
4958928 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 44.0 3.85e-01 79.2% 60.9%
3921426 264.2.1.1 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.60 45.0 3.75e-01 80.6% 78.5%
3770801 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.60 38.0 3.51e-01 73.6% 48.4%
3705600 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.60 45.0 3.71e-01 80.6% 76.9%
3683658 2484.1.1.157 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.59 42.0 2.72e-01 75.0% 18.9%
5031909 1.1.1.18 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.59 44.0 3.80e-01 80.6% 70.3%
4969904 1.1.1.18 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.59 44.0 3.68e-01 81.9% 62.2%
4656484 1.1.1.5 beta barrels › cradle loop barrel › RIFT-related › acid protease › Zn_protease 0.59 45.0 3.68e-01 86.1% 71.3%
4984593 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.59 42.0 3.54e-01 77.8% 97.8%
5028105 1.1.1.1 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.58 43.0 3.62e-01 81.9% 65.9%
3829832 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.58 44.0 3.88e-01 83.3% 62.7%
2545212 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.58 44.0 3.35e-01 84.7% 75.5%
4993154 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.58 42.0 3.61e-01 80.6% 65.6%
3627777 71.1.1.19 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF25898 0.57 43.0 3.11e-01 84.7% 66.7%
3941713 243.1.1.6 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.57 42.0 3.37e-01 77.8% 81.4%
3867704 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.57 43.0 2.85e-01 81.9% 32.9%
3288890 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 40.0 3.28e-01 75.0% 47.7%
3276225 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 44.0 3.95e-01 90.3% 60.9%
3289158 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 41.0 3.60e-01 79.2% 73.6%
5062717 283.2.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.56 43.0 3.77e-01 86.1% 98.3%
4968533 1.1.1.18 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.55 40.0 3.60e-01 81.9% 74.8%
3602503 264.2.1.1 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.55 41.0 3.52e-01 80.6% 80.8%
3700323 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 39.0 4.31e-01 75.0% 98.2%
3268888 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.55 38.0 3.64e-01 75.0% 84.4%
5008201 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 43.0 3.98e-01 87.5% 83.2%
4969351 1.1.1.18 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.55 40.0 3.52e-01 80.6% 72.2%
4193401 243.1.1.34 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › YchJ_M-like 0.54 40.0 3.53e-01 79.2% 59.1%
3587653 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 40.0 3.51e-01 83.3% 56.7%
4608992 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.53 43.0 3.46e-01 94.4% 62.0%
5054135 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 37.0 3.11e-01 72.2% 79.2%
4968321 1.1.1.8 beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.53 37.0 3.41e-01 77.8% 75.2%
3253090 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 39.0 3.43e-01 80.6% 62.7%
4074364 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 38.0 3.22e-01 79.2% 50.0%
3914493 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.52 43.0 2.59e-01 95.8% 56.2%
3631162 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.01e-01 79.2% 91.9%
3949731 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.51 40.0 3.32e-01 84.7% 71.5%
3217507 243.1.1.98 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382_C 0.51 40.0 3.45e-01 84.7% 59.6%
2628859 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.51 37.0 3.20e-01 83.3% 88.8%
3403140 11.1.1.44 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 0.50 36.0 3.16e-01 77.8% 88.7%
D2 medium residues 173-257
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25728.2 best US29 114.9 5.20e-33 100.0% 22.2%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ufbA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 38.0 2.67e-01 80.0% 47.1%
4krdA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 34.0 2.61e-01 70.6% 90.0%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3915469 243.5.1.0 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.50 41.0 3.49e-01 100.0% 53.8%