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membrane_protein_Allo46

Euk-Vir

Cyprinid_herpesvirus_1

membrane_protein_Allo46__YP_007003762__Cyprinid_herpesvirus_1__317858

Identity

Accession:: YP_007003762 ↗
Protein ID:: membrane_protein_Allo46
Kingdom:: euk

Quality

39.7 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Alloherpesviridae› Cyvirus› Cyprinid_herpesvirus_1

TaxID: 317858

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-130

PDB

D2 high residues 1129-1204

PDB

Domain cluster: rep: ORF72__YP_656580__Ranid_herpesvirus_2__389214__D963-1031

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17072.11 best	Spike_torovirin	111.8	4.20e-32	100.0%	5.9%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3prbA02	2.40.10.330	Mainly Beta › Beta Barrel › Thrombin, subunit H ›	0.72	29.0	3.72e-01	97.4%	63.6%
6s8zA01	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.60	32.0	3.57e-01	97.4%	64.5%
1uebA01	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.59	31.0	3.40e-01	97.4%	61.9%
3a5zB01	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.58	31.0	3.44e-01	97.4%	63.5%
1b69A00	3.30.160.60	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger	0.57	36.0	3.79e-01	84.2%	71.0%
2hdlA00	2.40.50.40	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.56	32.0	3.19e-01	100.0%	53.2%
6bogA02	2.30.30.930	Mainly Beta › Roll › SH3 type barrels. ›	0.52	28.0	3.04e-01	98.7%	60.0%
2aw4Z00	4.10.830.30	Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › Ribosomal protein L31	0.50	29.0	3.03e-01	93.4%	57.1%
4hsrB01	3.60.20.10	Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain	0.50	42.0	2.87e-01	97.4%	86.3%
4cckA03	3.90.930.40	Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 ›	0.50	42.0	3.54e-01	100.0%	89.0%
3zpmA00	3.15.10.10	Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1	0.50	35.0	2.64e-01	75.0%	81.5%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4524363	4.1.1.57 ↗	beta barrels › SH3 › SH3 › SH3 › EFP_N	0.62	33.0	3.53e-01	97.4%	60.0%
4175039	3604.1.1.1 ↗	a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion	0.61	32.0	3.61e-01	97.4%	67.3%
3599172	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.60	32.0	3.44e-01	97.4%	60.0%
4086925	4.1.1.57 ↗	beta barrels › SH3 › SH3 › SH3 › EFP_N	0.60	32.0	3.45e-01	97.4%	61.5%
3585538	4.8.1.6 ↗	beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot	0.59	30.0	2.77e-01	98.7%	35.0%
4929725	375.1.1.289 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5679	0.59	28.0	3.45e-01	97.4%	71.1%
4201878	4.1.1.57 ↗	beta barrels › SH3 › SH3 › SH3 › EFP_N	0.59	32.0	3.43e-01	97.4%	61.5%
4345080	4.1.1.57 ↗	beta barrels › SH3 › SH3 › SH3 › EFP_N	0.56	30.0	3.20e-01	97.4%	60.0%
3212772	4.8.1.6 ↗	beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot	0.55	34.0	3.45e-01	98.7%	63.5%
3245228	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.55	37.0	2.47e-01	71.1%	18.8%
5032255	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.54	36.0	3.78e-01	100.0%	75.7%
3187166	4.8.1.1 ↗	beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo	0.53	28.0	2.77e-01	98.7%	42.4%
7726	4325.1.1.1 ↗	mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508	0.52	29.0	3.29e-01	100.0%	72.4%
4297945	4325.1.1.1 ↗	mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508	0.52	28.0	3.19e-01	96.1%	70.9%
4146937	4.1.1.57 ↗	beta barrels › SH3 › SH3 › SH3 › EFP_N	0.51	26.0	2.79e-01	78.9%	47.7%
4028885	4.1.1.57 ↗	beta barrels › SH3 › SH3 › SH3 › EFP_N	0.50	32.0	3.46e-01	100.0%	76.9%
4646632	4.1.1.57 ↗	beta barrels › SH3 › SH3 › SH3 › EFP_N	0.50	26.0	2.82e-01	78.9%	47.7%
None	—		0.50	39.0	2.64e-01	86.8%	96.7%

D3 medium residues 241-416

PDB

D4 medium residues 437-478_537-582

PDB

D5 medium residues 479-536

PDB

D6 medium residues 728-754_1075-1128

PDB

D7 medium residues 755-823_870-896_1016-1042

PDB

D8 medium residues 1225-1412

PDB