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membrane_protein

Euk-Vir

Marseillevirus_marseillevirus

membrane_protein__YP_003407067__Marseillevirus_marseillevirus__694581

Identity

Accession:
YP_003407067 ↗
Protein ID:
membrane_protein
Kingdom:
euk

Quality

80.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Marseillevirus_marseillevirus

TaxID: 694581

Cluster

View cluster (25 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-89_182-198
PDB
Domain cluster: rep: hypothetical_protein_A3303_gp394__YP_009238899__Brazilian_marseillevirus__1813599__D1-85
D2 medium residues 90-181
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 31.0 3.46e-01 80.4% 66.7%
1eg3A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 21.0 3.02e-01 78.3% 73.7%
2h92A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 42.0 3.30e-01 88.0% 80.1%
2pw4A00 1.10.3300.10 Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain 0.52 39.0 3.18e-01 79.3% 47.5%
6lw5A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 46.0 3.25e-01 100.0% 77.2%
3u5eU00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.52 37.0 3.62e-01 91.3% 69.0%
5tk8A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.51 43.0 3.49e-01 96.7% 78.0%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.26e-01 75.0% 96.9%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944224 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.66 58.0 4.49e-01 100.0% 54.0%
3726808 4163.1.1.1 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.65 46.0 3.64e-01 72.8% 41.7%
4972215 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.62 44.0 3.36e-01 73.9% 92.9%
3783976 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.59 42.0 4.25e-01 72.8% 77.8%
3219795 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.59 51.0 3.51e-01 96.7% 32.1%
3769618 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.58 45.0 3.11e-01 83.7% 26.1%
1504755 223.3.1.8 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 0.57 27.0 3.81e-01 97.8% 100.0%
4026519 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.57 39.0 3.47e-01 78.3% 48.1%
4025072 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.57 44.0 4.14e-01 83.7% 94.8%
4033043 616.1.1.41 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Terminase_4 0.57 38.0 3.90e-01 77.2% 71.1%
5082452 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.57 46.0 3.47e-01 97.8% 33.7%
3826145 1065.1.1.1 ↗ alpha bundles › SPX domain › SPX domain › SPX domain › SPX 0.56 49.0 3.74e-01 97.8% 83.1%
3483549 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.56 48.0 3.30e-01 96.7% 37.9%
3939311 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.56 41.0 3.92e-01 78.3% 86.4%
3917696 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 47.0 3.72e-01 100.0% 69.5%
3717247 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.53 45.0 3.51e-01 97.8% 71.4%
3788135 109.4.1.628 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS 0.53 46.0 2.84e-01 98.9% 21.0%
3603146 2008.1.1.95 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII 0.53 46.0 3.33e-01 100.0% 83.2%
3574531 193.1.1.1 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH 0.53 30.0 2.60e-01 84.8% 31.2%
3195109 109.2.1.5 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Trehalase 0.53 45.0 2.78e-01 98.9% 36.3%
3938116 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 46.0 3.41e-01 100.0% 65.1%
3190457 7573.1.1.1 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.53 46.0 3.67e-01 100.0% 71.4%
3647744 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.52 40.0 3.72e-01 85.9% 85.6%
3923603 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.52 43.0 3.08e-01 96.7% 39.1%
3751173 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.51 29.0 3.23e-01 82.6% 69.3%
3964288 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 41.0 3.06e-01 90.2% 68.2%
165164 2498.1.1.7 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3,Peptidase_M3_N 0.51 44.0 3.11e-01 100.0% 36.0%
3834208 2004.5.1.3 ↗ a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN 0.51 38.0 2.91e-01 82.6% 45.0%
3686916 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.50 41.0 3.18e-01 89.1% 69.8%