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membrane_protein
Euk-VirSwine_enteric_coronavirus
membrane_protein__YP_009199246__Swine_enteric_coronavirus__1766554
Identity
- Accession:
- YP_009199246 ↗
- Protein ID:
- membrane_protein
- Kingdom:
- euk
Quality
73.5
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Nidovirales›
Coronaviridae›
Alphacoronavirus›
Swine_enteric_coronavirus
TaxID: 1766554
Cluster
View cluster (89 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 155-244
Domain cluster:
rep: putative_membrane_protein__YP_009408173__Morelia_viridis_nidovirus__2016400__D128-203
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01635.25 best | CoV_M | 97.4 | 1.10e-27 | 100.0% | 43.7% |
D2
medium
residues 4-23_35-71
D3
medium
residues 72-154
Domain cluster:
rep: membrane_protein__YP_005352873__Wigeon_coronavirus_HKU20__1159908__D31-103
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01635.25 best | CoV_M | 125.9 | 2.00e-36 | 100.0% | 39.3% |
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.85 | 64.0 | 5.49e-01 | 86.7% | 52.4% |
| 3bqoA00 | 1.25.40.210 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain | 0.80 | 51.0 | 3.70e-01 | 73.5% | 26.2% |
| 2gs4A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.79 | 66.0 | 5.16e-01 | 86.7% | 47.5% |
| 4b6xA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.79 | 57.0 | 6.18e-01 | 77.1% | 89.9% |
| 4h63K00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.79 | 62.0 | 5.79e-01 | 86.7% | 69.4% |
| 2gd5A00 | 6.10.140.1230 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 64.0 | 5.26e-01 | 89.2% | 70.4% |
| 2qqyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.75 | 57.0 | 4.75e-01 | 79.5% | 81.2% |
| 3etuA01 | 1.10.287.3290 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.75 | 48.0 | 5.40e-01 | 72.3% | 84.6% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.74 | 61.0 | 5.90e-01 | 85.5% | 93.3% |
| 2fcwA00 | 1.20.81.10 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain | 0.73 | 57.0 | 5.23e-01 | 83.1% | 93.4% |
| 1z0pA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 54.0 | 5.79e-01 | 80.7% | 89.0% |
| 3teqB00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.73 | 62.0 | 5.78e-01 | 91.6% | 96.0% |
| 1e52A00 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.73 | 48.0 | 5.67e-01 | 72.3% | 100.0% |
| 2oo2A00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.72 | 44.0 | 4.62e-01 | 85.5% | 67.1% |
| 3kwoA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.72 | 57.0 | 4.67e-01 | 84.3% | 80.5% |
| 5jrcA00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 52.0 | 3.94e-01 | 88.0% | 33.9% |
| 4dciA00 | 6.10.140.1110 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 51.0 | 4.26e-01 | 77.1% | 49.0% |
| 3iq1B00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.70 | 59.0 | 4.69e-01 | 89.2% | 74.8% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 57.0 | 5.58e-01 | 88.0% | 79.1% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.69 | 55.0 | 5.20e-01 | 86.7% | 72.5% |
| 1rqgA04 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.69 | 52.0 | 4.26e-01 | 83.1% | 43.7% |
| 1cpqA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.69 | 52.0 | 4.45e-01 | 79.5% | 98.4% |
| 1rv2D04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.68 | 53.0 | 5.73e-01 | 85.5% | 98.6% |
| 5xtck00 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 55.0 | 5.24e-01 | 89.2% | 75.3% |
| 3r2kA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.68 | 62.0 | 5.02e-01 | 100.0% | 81.8% |
| 1zymA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.68 | 50.0 | 4.39e-01 | 100.0% | 52.4% |
| 3unoE00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.67 | 62.0 | 4.85e-01 | 100.0% | 77.8% |
| 1s3qG00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.67 | 61.0 | 4.87e-01 | 100.0% | 81.0% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.66 | 41.0 | 4.31e-01 | 83.1% | 68.4% |
| 3m7gA02 | 1.10.8.1010 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.66 | 51.0 | 4.87e-01 | 86.7% | 71.6% |
| 1luwA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.65 | 46.0 | 5.01e-01 | 81.9% | 96.9% |
| 3t9jA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.63 | 58.0 | 4.76e-01 | 98.8% | 84.0% |
| 3kflA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.62 | 53.0 | 4.10e-01 | 91.6% | 72.6% |
| 1m5iA00 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.62 | 50.0 | 4.66e-01 | 86.7% | 96.2% |
| 2ke4A00 | 6.10.140.470 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 50.0 | 4.79e-01 | 89.2% | 91.8% |
| 4h63H01 | 1.20.58.1710 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 45.0 | 4.81e-01 | 79.5% | 90.3% |
| 4e4eA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.59 | 45.0 | 4.70e-01 | 85.5% | 97.2% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4477580 | 5086.1.1.118 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › BBS2_hp | 0.88 | 64.0 | 6.43e-01 | 77.1% | 74.1% |
| 3965106 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.86 | 62.0 | 6.49e-01 | 73.5% | 82.7% |
| 140767 | 632.8.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › DUF6853 | 0.85 | 64.0 | 5.49e-01 | 86.7% | 52.4% |
| 5024994 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.85 | 66.0 | 5.71e-01 | 80.7% | 61.7% |
| 3560750 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.85 | 60.0 | 6.58e-01 | 81.9% | 87.1% |
| 3186698 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.83 | 63.0 | 6.45e-01 | 78.3% | 82.5% |
| 3296414 | 192.29.1.168 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF641 | 0.83 | 58.0 | 6.31e-01 | 72.3% | 87.1% |
| 3666875 | 1025.1.1.4 ↗ | alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain › DUF641 | 0.83 | 65.0 | 6.81e-01 | 88.0% | 90.7% |
| 3240117 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.82 | 62.0 | 6.05e-01 | 78.3% | 77.8% |
| 4489484 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.82 | 70.0 | 4.28e-01 | 89.2% | 88.8% |
| 3175368 | 376.1.3.81 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Rbsn | 0.81 | 54.0 | 5.74e-01 | 83.1% | 76.0% |
| 3906819 | 192.17.1.6 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › CC2D1A-B_DM14 | 0.81 | 61.0 | 4.91e-01 | 86.7% | 43.3% |
| 3231047 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.81 | 73.0 | 6.03e-01 | 100.0% | 57.9% |
| 3738041 | 192.5.1.1 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 | 0.80 | 61.0 | 6.11e-01 | 79.5% | 77.6% |
| 3410968 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.78 | 60.0 | 6.55e-01 | 90.4% | 95.7% |
| 4347101 | 5086.1.1.119 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › RRG1_C | 0.78 | 60.0 | 5.82e-01 | 83.1% | 74.4% |
| 3336677 | 605.1.1.132 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF641 | 0.78 | 60.0 | 6.29e-01 | 91.6% | 89.3% |
| 4235024 | 109.4.1.2782 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6, PF30363, PF30475 | 0.77 | 57.0 | 3.32e-01 | 77.1% | 9.9% |
| 3669701 | 603.1.1.160 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 14-3-3 | 0.76 | 62.0 | 5.54e-01 | 86.7% | 73.0% |
| 4973840 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.76 | 60.0 | 4.89e-01 | 83.1% | 49.7% |
| 3868214 | 109.4.1.1302 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30363 | 0.76 | 56.0 | 4.43e-01 | 77.1% | 40.0% |
| 4386662 | 3291.1.1.158 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Seryl_tRNA_N | 0.75 | 59.0 | 5.21e-01 | 81.9% | 81.7% |
| 3904792 | 109.4.1.2788 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2, TPR_6, PF30363, PF30475 | 0.75 | 55.0 | 3.22e-01 | 77.1% | 9.9% |
| 4961158 | 5076.2.1.3 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF4013 | 0.74 | 56.0 | 4.12e-01 | 80.7% | 33.2% |
| 3775375 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.73 | 57.0 | 4.63e-01 | 81.9% | 48.0% |
| 4962838 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.73 | 67.0 | 4.82e-01 | 97.6% | 86.5% |
| 3711476 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.72 | 57.0 | 5.41e-01 | 85.5% | 74.0% |
| None | — | 0.68 | 47.0 | 3.02e-01 | 72.3% | 39.0% | |
| 4399468 | 150.1.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin | 0.68 | 61.0 | 4.87e-01 | 100.0% | 79.4% |
| 3336650 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 47.0 | 2.96e-01 | 75.9% | 35.1% |
| 3363789 | 109.4.1.285 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PSMD12-CSN4_N | 0.64 | 45.0 | 2.95e-01 | 73.5% | 18.2% |