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methyltransferase_MTR

Euk-Vir

Citrus_leprosis_virus_C

methyltransferase_MTR__YP_654565__Citrus_leprosis_virus_C__347219

Identity

Accession:
YP_654565 ↗
Protein ID:
methyltransferase_MTR
Kingdom:
euk

Quality

80.5 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Kitaviridae› Cilevirus› Citrus_leprosis_virus_C

TaxID: 347219

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 77-309
PDB
Domain cluster: rep: uncovered_polypeptide_polyprotein__YP_001086452_0-758__Chrysanthemum_virus_B__12165__D72-292
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01660.23 best Vmethyltransf 56.1 4.50e-15 85.0% 53.4%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qdjA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.73 53.0 5.62e-01 100.0% 82.7%
3fpfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.72 50.0 4.84e-01 100.0% 62.5%
4rv9A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.71 55.0 5.85e-01 99.6% 90.5%
3h2bB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.71 53.0 5.75e-01 100.0% 90.8%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.70 52.0 5.81e-01 97.0% 96.2%
1zkdA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.69 50.0 5.74e-01 99.6% 100.0%
4krgA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.68 57.0 5.59e-01 100.0% 82.3%
7zp2C02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.66 44.0 5.25e-01 96.1% 99.4%
2yxdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 48.0 5.38e-01 99.6% 98.9%
5gm2K01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 56.0 5.80e-01 100.0% 97.7%
3bt7A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 47.0 4.87e-01 100.0% 79.9%
3vc1J00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 59.0 5.58e-01 100.0% 93.1%
2pbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 45.0 4.64e-01 97.0% 78.9%
3tpfA02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.62 42.0 4.98e-01 94.8% 100.0%
6pf8A01 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.60 39.0 4.45e-01 99.1% 86.9%
3lstA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 54.0 5.33e-01 100.0% 98.0%
6i6lA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 53.0 5.18e-01 99.6% 96.8%
3pp8A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 40.0 4.44e-01 96.1% 100.0%
2wmfA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.51 27.0 3.63e-01 84.1% 94.4%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.51 19.0 2.68e-01 84.5% 66.4%
4j0eA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 42.0 4.48e-01 90.6% 99.5%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3801587 2003.1.5.21 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CMAS 0.73 52.0 5.96e-01 91.8% 96.0%
4944117 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.68 51.0 5.14e-01 98.7% 76.6%
5004023 2003.1.5.179 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.68 49.0 5.55e-01 99.1% 95.6%
4505706 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.67 59.0 5.93e-01 100.0% 90.8%
4949002 2003.1.5.64 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_9 0.65 56.0 5.63e-01 96.6% 89.5%
None — 0.62 59.0 5.52e-01 100.0% 92.5%
4464657 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.61 20.0 3.53e-01 84.1% 87.5%
3981151 2003.1.5.21 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CMAS 0.59 56.0 5.47e-01 100.0% 97.6%
3283090 11.1.1.1232 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26059 0.56 20.0 3.30e-01 97.4% 88.7%
4957465 2003.1.5.79 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.55 49.0 5.06e-01 96.6% 100.0%
3605866 2003.1.5.156 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_31 0.54 51.0 4.14e-01 100.0% 86.8%
3927305 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 19.0 2.67e-01 97.4% 63.6%
3464886 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.53 14.0 2.67e-01 77.7% 80.0%
4945422 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.53 49.0 4.82e-01 99.6% 94.4%
None — 0.50 47.0 4.00e-01 100.0% 88.3%
4093245 2003.1.5.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.50 47.0 4.06e-01 100.0% 90.1%
None — 0.50 47.0 4.00e-01 99.6% 87.7%
None — 0.50 47.0 4.01e-01 100.0% 89.8%
D2 high residues 331-402
PDB
D3 medium residues 20-76
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3grfA01 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.58 45.0 3.53e-01 91.2% 63.0%
1dgmA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 38.0 2.48e-01 70.2% 21.7%
5oesA04 3.40.50.1760 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic 0.54 38.0 2.97e-01 73.7% 94.4%
6de8A01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.54 40.0 3.01e-01 80.7% 100.0%
3szuA03 3.40.1010.20 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain 0.53 35.0 3.05e-01 70.2% 87.0%
3lm6A00 3.40.47.40 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Stage V sporulation protein AD 0.53 42.0 2.71e-01 93.0% 85.6%
5mmjb01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.52 40.0 3.15e-01 91.2% 91.5%
3gl3D00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 35.0 2.76e-01 71.9% 32.8%
1l6rA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.50 34.0 2.64e-01 73.7% 53.5%
6ks6Q03 3.50.7.10 Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL 0.50 43.0 3.23e-01 100.0% 63.8%
2x49A04 3.40.50.12790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 0.50 34.0 2.88e-01 71.9% 53.5%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4049592 2003.6.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › HK 0.60 44.0 2.86e-01 80.7% 81.0%
None — 0.59 39.0 2.72e-01 70.2% 62.9%
1179764 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.58 37.0 3.69e-01 71.9% 58.7%
3316882 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 37.0 2.91e-01 70.2% 30.4%
4028522 7568.1.1.4 ↗ a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_2 0.56 40.0 3.33e-01 89.5% 39.1%
4071941 7577.1.1.1 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 0.52 38.0 2.19e-01 77.2% 9.1%
4012216 7528.1.1.0 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains 0.51 34.0 2.52e-01 70.2% 26.7%
3588973 2007.5.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase 0.51 41.0 2.93e-01 100.0% 79.0%
4956685 7528.1.1.2 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_II 0.50 39.0 3.30e-01 89.5% 50.5%