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minor_coat_protein
Euk-VirBlackberry_vein_banding-associated_virus
minor_coat_protein__YP_008411016__Blackberry_vein_banding-associated_virus__1381464
Identity
- Accession:
- YP_008411016 ↗
- Protein ID:
- minor_coat_protein
- Kingdom:
- euk
Quality
57.8
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Closteroviridae›
Ampelovirus›
Blackberry_vein_banding-associated_virus
TaxID: 1381464
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-50_173-193
D2
medium
residues 51-74_141-172_194-221
D3
medium
residues 75-140
D4
medium
residues 277-334_368-387
D5
medium
residues 335-367_388-476
Domain cluster:
rep: unnamed_protein_product__YP_003002362__Lettuce_chlorosis_virus__642478__D74-228
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01785.23 best | Closter_coat | 25.2 | 1.20e-05 | 91.0% | 48.7% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1m5iA00 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.54 | 26.0 | 2.82e-01 | 82.8% | 53.3% |
| 3rklA00 | 6.10.140.1640 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 28.0 | 3.46e-01 | 70.5% | 77.5% |
| 3if8B02 | 1.20.58.730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 31.0 | 3.40e-01 | 90.2% | 74.0% |
| 3fggA00 | 1.10.3950.10 | Mainly Alpha › Orthogonal Bundle › putative ecf-type sigma factor negative effector from bacillus cereus › putative ecf-type sigma factor negative effector from bacillus cereus | 0.50 | 37.0 | 3.55e-01 | 78.7% | 93.9% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4833627 | 3143.1.1.2 ↗ | alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Papaya mosaic virus capsid protein › Poty_coat | 0.76 | 67.0 | 6.00e-01 | 92.6% | 72.8% |
| 4541653 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.53 | 26.0 | 2.97e-01 | 80.3% | 58.9% |