minor_inner_capsid

Euk-Vir

Cangyuan_orthoreovirus

minor_inner_capsid__YP_009110699__Cangyuan_orthoreovirus__1388882

Identity

84.4 mean pLDDT

Orthornavirae› Duplornaviricota› Resentoviricetes› Reovirales› Spinareoviridae› Orthoreovirus› Cangyuan_orthoreovirus

TaxID: 1388882

View cluster (12 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-77_120-177

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8f5dA05	3.40.1190.10	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain	0.62	47.0	3.69e-01	82.3%	58.4%
3p3vA00	3.40.35.10	Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component	0.60	43.0	3.68e-01	75.0%	87.6%
1svvA01	3.40.640.10	Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain)	0.55	38.0	2.90e-01	71.9%	50.0%
3l4eA00	3.40.50.880	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain	0.53	37.0	3.05e-01	74.0%	90.1%
2jisB02	3.40.640.10	Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain)	0.53	36.0	2.77e-01	70.8%	53.6%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3185916	7512.1.1.0 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase	0.54	47.0	3.81e-01	99.0%	94.2%
4255399	7512.1.1.15 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyphos_transf	0.52	41.0	3.48e-01	88.5%	82.3%
4565019	2007.1.14.6 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › CbiX	0.51	36.0	3.54e-01	74.0%	97.1%
3985555	2007.6.1.4 ↗	a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS	0.51	35.0	2.77e-01	70.8%	41.0%

D2 high residues 287-392

PDB

Domain cluster: rep: VP4__YP_009507751__Scophthalmus_maximus_reovirus__994485__D285-391

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07781.16 best	Reovirus_Mu2	42.4	4.90e-11	100.0%	14.0%

D3 high residues 595-726

PDB

Domain cluster: rep: muA__YP_009020574__Reptilian_orthoreovirus__226613__D604-737

D4 medium residues 1-39_189-279

PDB

Domain cluster: rep: minor_core_protein__YP_004769550__Baboon_orthoreovirus__75888__D1-64_188-280

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1fnnA02	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.52	36.0	3.28e-01	70.0%	82.2%
3kfvA02	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.51	44.0	4.29e-01	94.6%	97.9%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4421588	2003.1.2.30 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_3	0.53	42.0	4.22e-01	85.4%	90.8%
4210081	7526.1.1.1 ↗	a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › IF-2	0.53	39.0	3.46e-01	95.4%	53.2%
4015523	7526.1.1.0 ↗	a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3	0.51	38.0	3.57e-01	96.2%	63.1%
3615331	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.51	44.0	3.71e-01	96.2%	96.9%
4972761	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.50	43.0	3.57e-01	94.6%	95.0%

D5 medium residues 395-442_511-538_573-594

PDB

Domain cluster: rep: muA__YP_009020574__Reptilian_orthoreovirus__226613__D404-449_512-560

D6 medium residues 443-510_539-572

PDB

Domain cluster: rep: muA__YP_009020574__Reptilian_orthoreovirus__226613__D450-511_561-594

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07781.16 best	Reovirus_Mu2	28.4	8.40e-07	38.2%	4.8%