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minor_inner_capsid
Euk-VirPulau_reovirus
minor_inner_capsid__YP_009507779__Pulau_reovirus__253454
Identity
- Accession:
- YP_009507779 ↗
- Protein ID:
- minor_inner_capsid
- Kingdom:
- euk
Quality
89.0
mean pLDDT
Taxonomy
Orthornavirae›
Duplornaviricota›
Resentoviricetes›
Reovirales›
Spinareoviridae›
Orthoreovirus›
Pulau_reovirus
TaxID: 253454
Cluster
View cluster (12 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 287-392
Domain cluster:
rep: VP4__YP_009507751__Scophthalmus_maximus_reovirus__994485__D285-391
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07781.16 best | Reovirus_Mu2 | 45.5 | 5.60e-12 | 100.0% | 14.0% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.59 | 33.0 | 4.06e-01 | 86.8% | 86.6% |
| 1r5bA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.58 | 33.0 | 3.56e-01 | 86.8% | 65.2% |
| 4qv2A02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.57 | 38.0 | 3.69e-01 | 97.2% | 61.0% |
| 1h2cA00 | 2.70.20.20 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain | 0.53 | 47.0 | 4.51e-01 | 98.1% | 96.8% |
| 1cidA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 36.0 | 3.62e-01 | 94.3% | 69.8% |
| 2vqpA01 | 2.70.20.30 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › HRSV-S2 matrix protein, N-terminal domain | 0.52 | 45.0 | 4.34e-01 | 96.2% | 90.8% |
| 3wbiA04 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 37.0 | 3.38e-01 | 88.7% | 55.2% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3963092 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.63 | 34.0 | 3.60e-01 | 92.5% | 55.8% |
| 3965010 | 3115.4.1.1 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 | 0.60 | 39.0 | 4.16e-01 | 100.0% | 76.7% |
| 3880284 | 868.1.1.3 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 | 0.56 | 40.0 | 3.22e-01 | 96.2% | 38.5% |
| 3909822 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 34.0 | 3.36e-01 | 89.6% | 64.5% |
D2
high
residues 599-726
Domain cluster:
rep: muA__YP_009020574__Reptilian_orthoreovirus__226613__D604-737
D3
medium
residues 1-42_55-65_188-280
Domain cluster:
rep: minor_core_protein__YP_004769550__Baboon_orthoreovirus__75888__D1-64_188-280
D4
medium
residues 43-54_66-187
Domain cluster:
rep: minor_inner_capsid__YP_009110699__Cangyuan_orthoreovirus__1388882__D40-77_120-177
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07781.16 best | Reovirus_Mu2 | 51.4 | 9.00e-14 | 91.8% | 13.6% |
D5
medium
residues 395-442_512-539_573-598
Domain cluster:
rep: muA__YP_009020574__Reptilian_orthoreovirus__226613__D404-449_512-560
D6
medium
residues 443-511_540-572
Domain cluster:
rep: muA__YP_009020574__Reptilian_orthoreovirus__226613__D450-511_561-594
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07781.16 best | Reovirus_Mu2 | 27.3 | 1.80e-06 | 38.2% | 4.5% |