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minor_structural_protein
Euk-VirOvine_hokovirus
minor_structural_protein__YP_009507391__Ovine_hokovirus__1096142
Identity
- Accession:
- YP_009507391 ↗
- Protein ID:
- minor_structural_protein
- Kingdom:
- euk
Quality
66.2
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Quintoviricetes›
Piccovirales›
Parvoviridae›
Tetraparvovirus›
Ovine_hokovirus
TaxID: 1096142
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-191
Domain cluster:
rep: structural_protein__YP_009507389__Parvovirus_YX-2010_CHN__754189__D44-198
D2
medium
residues 226-319
D3
medium
residues 401-420_454-490_532-549_584-609_834-853
Domain cluster:
rep: capsid_protein_VP1__YP_009508791__Bat_bocavirus_WM40__2259810__D188-207_240-274_318-332_381-399_642-662
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1opoC01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 46.0 | 4.15e-01 | 86.0% | 85.5% |
| 5yl1A01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 44.0 | 3.89e-01 | 87.6% | 89.0% |
| 1mec100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 42.0 | 3.25e-01 | 86.8% | 73.7% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3107916 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.95 | 77.0 | 5.52e-01 | 83.5% | 71.7% |
| 2990501 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.92 | 75.0 | 5.03e-01 | 83.5% | 67.2% |
| 3108999 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.92 | 74.0 | 5.65e-01 | 83.5% | 93.1% |
| 3335168 | 11.1.1.807 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MP | 0.56 | 39.0 | 4.29e-01 | 71.1% | 100.0% |
D4
medium
residues 421-453_491-531_550-583_854-881
Domain cluster:
rep: capsid__YP_004013958__Porcine_parvovirus_4__707546__D235-310_345-380_625-643_658-681
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s58A00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.90 | 86.0 | 5.55e-01 | 100.0% | 84.5% |
| 2g8gA00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.86 | 83.0 | 5.34e-01 | 100.0% | 85.7% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2990572 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.95 | 92.0 | 5.87e-01 | 100.0% | 86.1% |
| 2707659 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.85 | 82.0 | 5.30e-01 | 100.0% | 82.1% |
| 4880563 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.73 | 67.0 | 5.96e-01 | 97.1% | 99.5% |
| 3063115 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.71 | 63.0 | 5.47e-01 | 93.4% | 85.4% |
| 3107916 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.68 | 64.0 | 4.82e-01 | 98.5% | 63.6% |
D5
medium
residues 610-666_686-723
D6
medium
residues 794-833_882-933
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s58A00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.78 | 68.0 | 4.17e-01 | 94.6% | 26.2% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2990572 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.85 | 75.0 | 4.55e-01 | 94.6% | 25.1% |
| 3528046 | 391.1.1.2 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › VWC | 0.54 | 25.0 | 2.98e-01 | 80.4% | 63.3% |