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movement_protein
Euk-VirPhasey_bean_mild_yellows_virus
movement_protein__YP_009198214__Phasey_bean_mild_yellows_virus__1756832
Identity
- Accession:
- YP_009198214 ↗
- Protein ID:
- movement_protein
- Kingdom:
- euk
Quality
61.7
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Sobelivirales›
Solemoviridae›
Polerovirus›
Phasey_bean_mild_yellows_virus
TaxID: 1756832
Cluster
View cluster (33 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-96_102-104
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01659.23 best | Luteo_Vpg | 127.6 | 4.30e-37 | 90.4% | 66.4% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lshA04 | 2.20.80.10 | Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex, chain A, domain 4 › Lipovitellin-phosvitin complex, chain A, domain 4 | 0.78 | 55.0 | 3.92e-01 | 72.3% | 44.2% |
| 1qj8A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.71 | 51.0 | 4.27e-01 | 73.4% | 54.1% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.68 | 54.0 | 4.54e-01 | 100.0% | 51.0% |
| 7a0hA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.65 | 60.0 | 4.83e-01 | 100.0% | 56.3% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.63 | 50.0 | 4.48e-01 | 87.2% | 97.1% |
| 4uv3E01 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.63 | 55.0 | 4.35e-01 | 100.0% | 66.0% |
| 3cygA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.60 | 52.0 | 4.83e-01 | 96.8% | 95.0% |
| 1fx3B00 | 3.10.420.10 | Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like | 0.59 | 44.0 | 3.78e-01 | 78.7% | 61.7% |
| 2n8xA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.59 | 49.0 | 4.08e-01 | 91.5% | 68.7% |
| 5dl5A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.59 | 51.0 | 3.33e-01 | 95.7% | 40.9% |
| 4frxA01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.58 | 52.0 | 3.42e-01 | 98.9% | 29.9% |
| 4n4rB00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.58 | 49.0 | 4.24e-01 | 94.7% | 78.8% |
| 1ffvB04 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.57 | 50.0 | 3.87e-01 | 93.6% | 75.8% |
| 3njtA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.56 | 50.0 | 3.48e-01 | 97.9% | 79.6% |
| 3nqkA02 | 2.40.128.440 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 | 0.56 | 46.0 | 3.97e-01 | 93.6% | 100.0% |
| 3bghB01 | 3.30.160.180 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Putative neuraminyllactose-binding hemagglutinin homolog like domain | 0.55 | 47.0 | 4.02e-01 | 100.0% | 84.8% |
| 3s5tA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.55 | 49.0 | 4.14e-01 | 96.8% | 77.1% |
| 5tseA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.55 | 48.0 | 4.31e-01 | 98.9% | 87.5% |
| 1p4tA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.53 | 37.0 | 3.17e-01 | 73.4% | 69.7% |
| 3qq2B00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.52 | 44.0 | 3.40e-01 | 98.9% | 79.2% |
| 4kwyA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.52 | 44.0 | 3.94e-01 | 95.7% | 83.2% |
| 1cbyA00 | 3.40.198.10 | Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like | 0.52 | 43.0 | 3.27e-01 | 90.4% | 73.1% |
| 4ojdH01 | 2.60.98.60 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 | 0.52 | 38.0 | 3.25e-01 | 96.8% | 45.7% |
| 4afhE00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.51 | 43.0 | 3.34e-01 | 92.6% | 79.7% |
| 2oojA00 | 2.40.350.10 | Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like | 0.50 | 36.0 | 3.28e-01 | 100.0% | 54.2% |
| 1uynX00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.50 | 42.0 | 3.16e-01 | 98.9% | 75.6% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3787225 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.74 | 53.0 | 4.07e-01 | 73.4% | 43.6% |
| 3236032 | 5084.5.3.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel | 0.73 | 53.0 | 3.19e-01 | 74.5% | 21.4% |
| 3391818 | 3070.2.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain | 0.73 | 50.0 | 4.97e-01 | 74.5% | 67.7% |
| 4878135 | 5084.5.3.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel | 0.70 | 52.0 | 3.18e-01 | 77.7% | 37.6% |
| 3387833 | 7503.1.1.7 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LpoB | 0.70 | 56.0 | 4.71e-01 | 87.2% | 97.5% |
| 4928831 | 825.1.1.0 ↗ | beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins | 0.69 | 47.0 | 3.51e-01 | 70.2% | 92.4% |
| 3326287 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.68 | 50.0 | 4.61e-01 | 76.6% | 66.7% |
| 3398781 | 5087.3.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd | 0.68 | 61.0 | 4.28e-01 | 97.9% | 71.9% |
| 3968198 | 7503.1.1.1 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › CsgG | 0.67 | 57.0 | 4.37e-01 | 90.4% | 70.0% |
| 3890886 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.67 | 52.0 | 5.65e-01 | 83.0% | 96.2% |
| 4490044 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.65 | 45.0 | 3.19e-01 | 72.3% | 29.1% |
| 3254506 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.64 | 44.0 | 3.60e-01 | 70.2% | 44.8% |
| 3235810 | 5087.3.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd | 0.63 | 59.0 | 4.16e-01 | 100.0% | 71.1% |
| 4670128 | 5087.3.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht | 0.62 | 52.0 | 3.90e-01 | 90.4% | 91.0% |
| 5083619 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.62 | 49.0 | 4.35e-01 | 88.3% | 97.9% |
| 4037556 | 504.1.1.1 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB | 0.62 | 44.0 | 3.85e-01 | 83.0% | 49.3% |
| 4582509 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.61 | 45.0 | 3.29e-01 | 76.6% | 46.5% |
| 4383723 | 5087.3.1.0 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C | 0.60 | 50.0 | 3.40e-01 | 87.2% | 60.7% |
| 4556738 | 7503.1.1.1 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › CsgG | 0.60 | 52.0 | 3.95e-01 | 98.9% | 77.0% |
| 4927081 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.60 | 41.0 | 3.59e-01 | 71.3% | 49.7% |
| 2582184 | 5087.3.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd | 0.60 | 55.0 | 3.91e-01 | 100.0% | 69.5% |
| 1734923 | 5084.5.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD | 0.59 | 51.0 | 3.33e-01 | 95.7% | 41.0% |
| 1933316 | 1136.1.1.1 ↗ | a+b complex topology › ssRNA bacteriophage MS2 maturation protein › ssRNA bacteriophage MS2 maturation protein › ssRNA bacteriophage MS2 maturation protein › Phage_mat-A | 0.58 | 51.0 | 3.49e-01 | 96.8% | 90.6% |
| 3442957 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 40.0 | 3.54e-01 | 72.3% | 68.6% |
| 3498103 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.58 | 44.0 | 2.90e-01 | 83.0% | 38.8% |
| 3509818 | 11.1.5.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › muHD | 0.57 | 40.0 | 3.61e-01 | 72.3% | 93.1% |
| 3716267 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.57 | 47.0 | 3.27e-01 | 90.4% | 37.8% |
| 3553322 | 5089.1.1.3 ↗ | beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Gasdermin | 0.57 | 46.0 | 3.42e-01 | 88.3% | 77.6% |
| 3642420 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.56 | 47.0 | 4.02e-01 | 90.4% | 82.0% |
| 4540264 | 504.1.1.1 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB | 0.56 | 45.0 | 3.96e-01 | 89.4% | 59.3% |
| 4278326 | 7503.1.1.0 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain | 0.56 | 48.0 | 4.27e-01 | 95.7% | 83.7% |
| 3437564 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.55 | 49.0 | 4.11e-01 | 100.0% | 79.4% |
| 3965061 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.54 | 46.0 | 3.45e-01 | 97.9% | 85.4% |
| 3981414 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.54 | 38.0 | 2.47e-01 | 72.3% | 58.5% |
| 4377115 | 5084.3.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter | 0.52 | 45.0 | 2.61e-01 | 100.0% | 20.0% |
| 4012673 | 210.2.1.0 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain | 0.52 | 47.0 | 3.11e-01 | 98.9% | 40.0% |
| 3850704 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.52 | 42.0 | 2.91e-01 | 86.2% | 79.7% |
| 3784480 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.52 | 39.0 | 2.83e-01 | 77.7% | 91.6% |
| 3341415 | 11.1.5.80 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › TRAP_beta | 0.52 | 42.0 | 3.71e-01 | 91.5% | 67.8% |
| 5027088 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 42.0 | 3.77e-01 | 90.4% | 85.2% |
| 3716842 | 243.1.1.86 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2_MEX67 | 0.52 | 40.0 | 3.29e-01 | 81.9% | 55.3% |
| 5064585 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 42.0 | 4.31e-01 | 97.9% | 95.6% |