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myristylated_protein

Euk-Vir

Nile_crocodilepox_virus

myristylated_protein__YP_784271__Nile_crocodilepox_virus__1285600

Identity

Accession:
YP_784271 ↗
Protein ID:
myristylated_protein
Kingdom:
euk

Quality

81.0 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Crocodylidpoxvirus› Nile_crocodilepox_virus

TaxID: 1285600

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-122
PDB
Domain cluster: rep: Entry_fusion_complex_component__YP_009480597__Sea_otter_poxvirus__1416741__D22-115
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1i6uA01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.63 41.0 4.78e-01 94.1% 97.1%
2uv8A06 3.30.70.2490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 32.0 3.81e-01 84.2% 73.1%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.61 41.0 4.59e-01 100.0% 92.0%
6g80B01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 46.0 3.55e-01 89.1% 36.7%
1whrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.60 43.0 4.02e-01 86.1% 59.7%
4avaA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 41.0 3.39e-01 70.3% 81.4%
2h1yA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.59 32.0 3.69e-01 70.3% 72.9%
1i94H01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.57 41.0 4.50e-01 92.1% 97.4%
4pcqA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.57 34.0 3.73e-01 70.3% 71.4%
2yvsA02 3.30.70.2560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 30.0 3.67e-01 72.3% 86.4%
3pieA02 3.30.1370.250 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.56 44.0 4.44e-01 86.1% 90.0%
1whvA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 31.0 3.12e-01 70.3% 54.0%
1n67A01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 41.0 3.71e-01 83.2% 66.0%
4fqdB02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.53 47.0 3.71e-01 100.0% 64.4%
3c9gA01 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.52 41.0 3.88e-01 86.1% 95.2%
4pg4B03 3.30.70.3100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 31.0 3.51e-01 71.3% 80.0%
2m9kA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 32.0 3.34e-01 71.3% 66.7%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 40.0 3.91e-01 99.0% 77.2%
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.50 31.0 3.51e-01 78.2% 82.7%
4anoA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 42.0 3.38e-01 94.1% 51.2%
1ejdA01 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.50 44.0 3.55e-01 100.0% 75.4%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4218542 327.16.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.63 34.0 4.27e-01 70.3% 88.3%
5080701 2003.1.5.445 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GvpD_bR2 0.60 39.0 3.11e-01 96.0% 33.2%
3738367 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 29.0 3.50e-01 78.2% 72.3%
3624653 304.163.1.1 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.57 35.0 3.90e-01 70.3% 80.0%
3629469 304.4.1.53 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › R1_ABCA1 0.57 34.0 3.72e-01 70.3% 71.8%
3610739 304.24.1.35 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › PF26955 0.57 33.0 3.70e-01 71.3% 76.0%
3600578 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 33.0 2.02e-01 71.3% 8.9%
3859647 304.163.1.1 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.55 32.0 3.67e-01 72.3% 81.4%
3663293 304.12.1.10 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › ABCA12_C 0.54 32.0 3.63e-01 70.3% 81.4%
3891055 304.163.1.2 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › ACT_13 0.54 34.0 3.49e-01 71.3% 65.3%
3593012 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.54 32.0 3.63e-01 70.3% 78.7%
3819968 304.24.1.20 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › ABCA12_C 0.54 32.0 3.30e-01 71.3% 61.7%
3269719 304.8.1.54 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_13 0.54 34.0 3.40e-01 70.3% 61.0%
3551987 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 32.0 1.97e-01 72.3% 9.0%
3671314 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.53 32.0 2.46e-01 71.3% 24.0%
3743247 601.23.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.53 35.0 2.42e-01 98.0% 19.4%
3390426 304.163.1.1 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.53 33.0 3.39e-01 71.3% 64.0%
4526676 882.1.1.4 ↗ a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.52 41.0 3.76e-01 86.1% 89.6%
3993298 304.163.1.1 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.52 32.0 3.52e-01 71.3% 77.5%
3418959 387.1.5.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.51 29.0 3.58e-01 83.2% 100.0%
3720261 304.116.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor 0.51 39.0 3.33e-01 82.2% 87.6%
4142128 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 31.0 3.14e-01 70.3% 60.0%
3580171 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.51 39.0 4.00e-01 94.1% 88.4%
4972963 882.1.1.4 ↗ a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.51 40.0 3.82e-01 86.1% 94.2%
D2 medium residues 130-259
PDB
Domain cluster: rep: entry-fusion_complex_component,_myristylprotein__YP_008004471__Choristoneura_rosaceana_entomopoxvirus_L__1293539__D124-261
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03003.22 best Pox_G9-A16 56.8 2.80e-15 44.6% 45.3%