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non-structural_protein_1

Euk-Vir

Mink_bocavirus_1

non-structural_protein_1__YP_009272913__Mink_bocavirus_1__2259808

Identity

Accession:
YP_009272913 ↗
Protein ID:
non-structural_protein_1
Kingdom:
euk

Quality

73.2 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Quintoviricetes› Piccovirales› Parvoviridae› Bocaparvovirus› Mink_bocavirus_1

TaxID: 2259808

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-310
PDB
Domain cluster: rep: NS1__YP_009507375__Chipmunk_parvovirus__56820__D1-203
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22419.3 best HBoV_NS1-like_N 84.3 1.20e-23 88.8% 95.7%
D2 medium residues 352-409
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01057.24 best Parvo_NS1 21.3 1.70e-04 100.0% 20.7%
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u0jA01 1.10.10.950 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.80 68.0 6.99e-01 93.1% 98.2%
2prrA02 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.78 64.0 4.92e-01 100.0% 40.9%
1s7zA01 1.20.120.780 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DNA mimic ocr 0.73 61.0 5.03e-01 91.4% 95.0%
3e3vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 51.0 5.35e-01 96.6% 92.5%
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.66 56.0 4.86e-01 100.0% 75.5%
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 55.0 5.19e-01 98.3% 86.1%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 42.0 3.70e-01 72.4% 46.4%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 57.0 5.15e-01 98.3% 96.2%
3b4qA00 1.10.1200.100 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › conserved protein domain from corynebacterium diphtheriae 0.63 41.0 3.64e-01 74.1% 44.8%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.61 46.0 4.37e-01 79.3% 86.8%
3e22A03 1.10.287.600 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.61 44.0 4.57e-01 81.0% 83.3%
7y11B01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.61 41.0 3.98e-01 70.7% 63.5%
1x4oA00 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.59 49.0 4.52e-01 98.3% 76.9%
4gr2A00 1.10.1200.210 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX 0.59 41.0 3.34e-01 72.4% 40.9%
1ewrA02 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.59 53.0 4.13e-01 100.0% 53.8%
3of4A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.58 48.0 3.37e-01 96.6% 43.0%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.57 41.0 4.28e-01 77.6% 84.6%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.57 47.0 4.31e-01 91.4% 79.2%
4izzB02 1.10.10.1680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain 0.57 44.0 4.24e-01 98.3% 73.5%
1ltmA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.56 45.0 3.34e-01 93.1% 91.9%
3rguB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.55 41.0 3.60e-01 86.2% 52.9%
1aabA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.55 40.0 3.57e-01 77.6% 79.5%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.54 42.0 4.08e-01 89.7% 75.0%
2oyyA00 6.10.80.10 Special › Helix non-globular › DNA polymerase; domain 1 › Hexameric tyrosine-coordinated heme protein (HTHP) 0.54 39.0 3.70e-01 77.6% 91.5%
3ecqA07 6.10.140.660 Special › Helix non-globular › Helix Hairpins › 0.54 29.0 3.30e-01 77.6% 68.9%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.54 39.0 3.79e-01 81.0% 67.6%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.54 42.0 3.65e-01 86.2% 80.0%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.53 47.0 4.61e-01 98.3% 95.2%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.53 44.0 4.24e-01 91.4% 92.5%
2l9bA00 1.25.40.630 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 36.0 3.26e-01 77.6% 54.9%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.51 43.0 3.56e-01 91.4% 92.9%
5fhiA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 39.0 3.07e-01 89.7% 39.6%
7odyC01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.50 42.0 3.63e-01 93.1% 60.9%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4880005 10.2.1.16 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_NS1 0.86 77.0 5.49e-01 100.0% 36.1%
4224436 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.75 56.0 3.62e-01 100.0% 18.1%
4993593 198.1.1.27 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › PF27234 0.73 64.0 5.80e-01 100.0% 75.0%
4927487 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.73 66.0 6.02e-01 100.0% 78.7%
3686422 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.68 59.0 4.91e-01 100.0% 61.0%
3331225 5042.1.1.0 ↗ extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region 0.67 45.0 4.22e-01 81.0% 57.1%
3317025 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 57.0 4.23e-01 100.0% 38.7%
4994576 101.35.1.36 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › PF27234 0.65 51.0 4.95e-01 91.4% 78.3%
5007367 3567.1.1.196 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › PF27424 0.64 45.0 4.12e-01 81.0% 57.3%
3596019 109.46.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) 0.61 53.0 4.19e-01 100.0% 46.4%
3708281 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.59 51.0 4.76e-01 98.3% 97.3%
3590014 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.58 39.0 3.94e-01 81.0% 68.3%
4234668 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.58 47.0 3.09e-01 87.9% 43.0%
3607327 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 45.0 4.54e-01 94.8% 90.0%
5005176 604.15.1.0 ↗ alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like 0.56 47.0 4.60e-01 94.8% 87.7%
149872 3291.1.1.1 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.55 43.0 3.81e-01 89.7% 60.8%
3699443 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.54 44.0 3.47e-01 87.9% 68.7%
4927152 4049.1.1.0 ↗ alpha superhelices › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like 0.51 42.0 4.22e-01 89.7% 95.0%
3713190 4336.2.1.1 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › EnY2 0.51 35.0 3.00e-01 72.4% 84.2%
D3 medium residues 410-507_578-631
PDB
Domain cluster: rep: Rep_78_protein__YP_680423__adeno-associated_virus_2__10804__D308-421_457-489
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01057.24 best Parvo_NS1 127.0 9.60e-37 65.8% 36.5%
D4 medium residues 508-577
PDB
Domain cluster: rep: NS1_protein__NP_694863__Human_erythrovirus_V9__72197__D373-437
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01057.24 best Parvo_NS1 90.3 1.50e-25 100.0% 25.8%