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non-structural_protein
Euk-VirTomato_yellow_ring_virus
non-structural_protein__YP_010086212__Tomato_yellow_ring_virus__304859
Identity
- Accession:
- YP_010086212 ↗
- Protein ID:
- non-structural_protein
- Kingdom:
- euk
Quality
81.3
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Elliovirales›
Tospoviridae›
Orthotospovirus›
Tomato_yellow_ring_virus
TaxID: 304859
Cluster
View cluster (12 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 340-439
Domain cluster:
rep: NSs__YP_001740043__Tomato_zonate_spot_virus__460926__D339-437
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23017.3 best | WIV_2 | 129.2 | 7.20e-38 | 86.0% | 98.8% |
D2
medium
residues 1-47_97-245
Domain cluster:
rep: nonstructural_NSs_protein__YP_009505542__Watermelon_bud_necrosis_virus__76052__D1-47_104-243
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03231.19 best | Tospov_NS-S_N | 189.6 | 1.10e-55 | 76.5% | 43.0% |
| PF03231.19 | Tospov_NS-S_N | 53.4 | 3.10e-14 | 24.0% | 13.7% |
D3
medium
residues 48-96_246-338
Domain cluster:
rep: nonstructural_protein__YP_010086065__Alstroemeria_necrotic_streak_virus__693450__D50-104_243-329
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03231.19 best | Tospov_NS-S_N | 101.5 | 7.40e-29 | 66.9% | 26.2% |
| PF03231.19 | Tospov_NS-S_N | 64.0 | 1.90e-17 | 35.9% | 14.0% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d2uA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 31.0 | 3.82e-01 | 94.4% | 85.9% |
| 3jtyB01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.52 | 38.0 | 2.78e-01 | 76.1% | 92.9% |
| 1mtpA01 | 3.30.497.10 | Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 | 0.52 | 38.0 | 3.23e-01 | 76.1% | 67.1% |
| 3vskA03 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 38.0 | 2.84e-01 | 76.8% | 83.0% |
| 1pn2B01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 37.0 | 3.67e-01 | 90.8% | 71.6% |
| 7vu0A01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.50 | 37.0 | 2.66e-01 | 77.5% | 92.5% |
| 1m6kA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.50 | 38.0 | 3.12e-01 | 78.2% | 81.6% |
| 3vy8X00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.50 | 37.0 | 2.80e-01 | 76.8% | 92.4% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5047426 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.66 | 35.0 | 3.87e-01 | 77.5% | 63.5% |
| 3474976 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.59 | 33.0 | 3.51e-01 | 78.2% | 61.5% |
| 4199388 | 504.1.1.1 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB | 0.57 | 34.0 | 3.37e-01 | 70.4% | 57.9% |
| 5054725 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.56 | 31.0 | 3.42e-01 | 71.8% | 64.2% |
| 3962603 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.55 | 35.0 | 3.95e-01 | 71.1% | 82.7% |
| 4932446 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.54 | 32.0 | 3.44e-01 | 73.2% | 68.3% |
| 1491977 | 881.1.1.6 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN | 0.53 | 40.0 | 3.72e-01 | 78.2% | 78.0% |
| 2516709 | 881.1.1.6 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN | 0.52 | 40.0 | 3.70e-01 | 78.2% | 80.3% |
| 1308671 | 222.1.1.20 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MFE-2_hydrat-2_N | 0.52 | 33.0 | 3.48e-01 | 95.8% | 68.7% |
| 3280926 | 881.1.1.6 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN | 0.52 | 40.0 | 3.70e-01 | 79.6% | 81.0% |