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nonstructural_protein_1
Euk-VirDesmodus_rotundus_parvovirus
nonstructural_protein_1__YP_009328889__Desmodus_rotundus_parvovirus__1926498
Identity
- Accession:
- YP_009328889 ↗
- Protein ID:
- nonstructural_protein_1
- Kingdom:
- euk
Quality
66.0
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Quintoviricetes›
Piccovirales›
Parvoviridae›
Desmodus_rotundus_parvovirus
TaxID: 1926498
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 16-185
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6h8oA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.78 | 43.0 | 5.72e-01 | 71.2% | 96.8% |
| 1m55A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.74 | 58.0 | 5.57e-01 | 81.8% | 99.0% |
| 1l2mA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.73 | 46.0 | 5.45e-01 | 72.9% | 90.7% |
| 4kw3A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.72 | 61.0 | 5.19e-01 | 89.4% | 99.6% |
| 3luyA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.69 | 37.0 | 4.95e-01 | 72.9% | 98.9% |
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 45.0 | 5.32e-01 | 87.6% | 97.4% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.67 | 37.0 | 4.87e-01 | 78.2% | 100.0% |
| 4er8A00 | 3.30.70.1290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like | 0.66 | 50.0 | 5.12e-01 | 78.8% | 86.7% |
| 1r9wA00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.65 | 43.0 | 4.80e-01 | 79.4% | 83.3% |
| 2pgcA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 39.0 | 4.78e-01 | 77.1% | 100.0% |
| 3hx9B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 37.0 | 4.62e-01 | 74.1% | 100.0% |
| 6gdxA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 37.0 | 4.59e-01 | 75.9% | 96.3% |
| 3kg0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 36.0 | 4.53e-01 | 75.9% | 100.0% |
| 4dn9B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 35.0 | 4.43e-01 | 73.5% | 100.0% |
| 1pbuA00 | 3.30.70.1010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain | 0.60 | 46.0 | 4.72e-01 | 80.6% | 86.4% |
| 3e8oB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 35.0 | 4.37e-01 | 75.3% | 100.0% |
| 1iujA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 35.0 | 4.35e-01 | 74.1% | 100.0% |
| 3f44A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 41.0 | 3.89e-01 | 73.5% | 99.0% |
| 3kkfA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 36.0 | 4.33e-01 | 76.5% | 100.0% |
| 1lq9A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 37.0 | 4.44e-01 | 85.9% | 100.0% |
| 1tz0B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 33.0 | 4.23e-01 | 77.1% | 100.0% |
| 2bvfA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.55 | 42.0 | 3.94e-01 | 79.4% | 82.4% |
| 4dmzA02 | 3.30.70.2880 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 42.0 | 4.58e-01 | 97.1% | 99.3% |
| 3popA02 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.54 | 40.0 | 3.55e-01 | 76.5% | 90.5% |
| 2govA01 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.51 | 39.0 | 3.90e-01 | 88.8% | 76.9% |
| 3vteA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.51 | 38.0 | 3.75e-01 | 78.2% | 85.9% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2966256 | 304.55.1.1 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Gemini_AL1 | 0.78 | 47.0 | 5.92e-01 | 72.9% | 95.4% |
| 3464795 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.70 | 43.0 | 5.00e-01 | 79.4% | 85.8% |
| 4959045 | 304.8.1.81 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P | 0.68 | 53.0 | 5.62e-01 | 80.0% | 92.7% |
| 3348724 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.68 | 41.0 | 5.02e-01 | 74.1% | 95.2% |
| 4647651 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.67 | 45.0 | 5.22e-01 | 98.8% | 95.0% |
| 4133039 | 304.8.1.81 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P | 0.66 | 51.0 | 5.16e-01 | 79.4% | 97.6% |
| 1786499 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.65 | 37.0 | 4.23e-01 | 72.4% | 74.8% |
| 4511949 | 304.48.1.74 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Phage_GPA | 0.62 | 50.0 | 4.46e-01 | 84.1% | 87.1% |
| 4173640 | 304.55.1.27 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Phage_GPA | 0.61 | 50.0 | 4.28e-01 | 88.2% | 89.8% |
| 4170426 | 304.8.1.70 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Phage_GPA | 0.60 | 50.0 | 4.23e-01 | 88.2% | 87.0% |
| 5177 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.60 | 36.0 | 4.52e-01 | 73.5% | 100.0% |
| 999861 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.60 | 35.0 | 4.37e-01 | 72.9% | 99.0% |
| 3274324 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.59 | 38.0 | 4.55e-01 | 96.5% | 99.1% |
| 4987588 | 304.8.1.82 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 | 0.59 | 33.0 | 4.24e-01 | 74.7% | 96.8% |
| 4304749 | 304.8.1.81 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P | 0.58 | 54.0 | 4.69e-01 | 100.0% | 85.4% |
| 1168089 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.58 | 40.0 | 4.55e-01 | 91.8% | 95.1% |
| 3275597 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.58 | 44.0 | 3.88e-01 | 78.2% | 84.3% |
| 3968511 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.57 | 43.0 | 4.32e-01 | 78.2% | 98.3% |
| 3731471 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.57 | 37.0 | 4.44e-01 | 79.4% | 100.0% |
| 4219489 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.57 | 42.0 | 3.55e-01 | 74.7% | 80.7% |
| 4461324 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.56 | 34.0 | 4.11e-01 | 74.1% | 91.8% |
| 4682347 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.56 | 41.0 | 3.53e-01 | 75.3% | 82.2% |
| 3638657 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.56 | 42.0 | 3.70e-01 | 78.8% | 86.5% |
| 3196763 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.56 | 41.0 | 3.48e-01 | 75.3% | 82.2% |
| 4011130 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.56 | 41.0 | 3.60e-01 | 75.9% | 83.9% |
| 2605091 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.55 | 41.0 | 3.44e-01 | 75.3% | 78.8% |
| 4407903 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.55 | 40.0 | 3.54e-01 | 75.3% | 85.1% |
| 5018488 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.55 | 46.0 | 4.14e-01 | 89.4% | 83.8% |
| 3398289 | 390.1.1.8 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_4 | 0.55 | 29.0 | 3.73e-01 | 86.5% | 89.5% |
| 4015784 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.55 | 40.0 | 3.51e-01 | 75.3% | 82.7% |
| 4018691 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.54 | 40.0 | 3.51e-01 | 76.5% | 84.2% |
| 4622719 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.54 | 40.0 | 3.56e-01 | 75.3% | 89.9% |
| 4521182 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.54 | 40.0 | 3.55e-01 | 75.3% | 90.8% |
| 4263302 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.54 | 41.0 | 3.59e-01 | 78.8% | 84.3% |
| 4017351 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.54 | 40.0 | 3.35e-01 | 75.9% | 80.3% |
| 3291378 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.54 | 41.0 | 3.71e-01 | 80.0% | 98.3% |
| 5033589 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.53 | 44.0 | 4.11e-01 | 89.4% | 80.9% |
| 3268891 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.52 | 42.0 | 3.68e-01 | 84.1% | 74.7% |
| 4486659 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.52 | 38.0 | 3.41e-01 | 77.1% | 85.2% |
| 5004083 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.51 | 45.0 | 4.14e-01 | 95.9% | 83.6% |
| 4944778 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.51 | 46.0 | 4.20e-01 | 96.5% | 82.3% |
D2
medium
residues 205-257
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u0jA01 | 1.10.10.950 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.74 | 60.0 | 6.01e-01 | 94.3% | 90.9% |
| 1s7zA01 | 1.20.120.780 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DNA mimic ocr | 0.72 | 62.0 | 5.06e-01 | 98.1% | 96.0% |
| 2rreA00 | 1.10.10.2010 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.72 | 62.0 | 5.66e-01 | 100.0% | 85.1% |
| 3q9oA02 | 3.90.1350.10 | Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain | 0.68 | 56.0 | 4.10e-01 | 100.0% | 40.7% |
| 3emuA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.67 | 57.0 | 4.23e-01 | 100.0% | 71.5% |
| 6e6qA00 | 1.10.10.1100 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BFD-like [2Fe-2S]-binding domain | 0.66 | 56.0 | 5.51e-01 | 96.2% | 100.0% |
| 4esjA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 54.0 | 4.65e-01 | 100.0% | 63.3% |
| 4h8aB01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.62 | 42.0 | 4.09e-01 | 73.6% | 63.3% |
| 2cobA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.62 | 45.0 | 4.75e-01 | 100.0% | 97.7% |
| 2pbiA02 | 1.10.1240.60 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.62 | 51.0 | 4.18e-01 | 100.0% | 49.5% |
| 1xrhD01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.61 | 44.0 | 3.56e-01 | 79.2% | 39.8% |
| 1fnnB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 52.0 | 4.29e-01 | 100.0% | 57.3% |
| 2px0A01 | 1.20.120.1380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar FlhF biosynthesis protein, N domain | 0.60 | 39.0 | 3.54e-01 | 81.1% | 47.9% |
| 2m3aA00 | 1.10.10.1900 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Knl-2 Myb-like DNA-binding domain-like | 0.60 | 50.0 | 4.68e-01 | 96.2% | 77.6% |
| 3b4qA00 | 1.10.1200.100 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › conserved protein domain from corynebacterium diphtheriae | 0.59 | 40.0 | 3.43e-01 | 71.7% | 43.7% |
| 4aidA02 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.59 | 48.0 | 4.28e-01 | 98.1% | 80.5% |
| 4aciA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 49.0 | 3.54e-01 | 100.0% | 85.8% |
| 1q2lA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.59 | 50.0 | 3.34e-01 | 100.0% | 52.2% |
| 2yi9A05 | 1.20.1270.270 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › VP1, C-terminal extension domain | 0.58 | 40.0 | 3.52e-01 | 71.7% | 66.2% |
| 6o1wA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 45.0 | 2.95e-01 | 86.8% | 30.6% |
| 2ja2A05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.58 | 48.0 | 4.08e-01 | 100.0% | 73.5% |
| 4wr4A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 43.0 | 3.49e-01 | 83.0% | 70.5% |
| 3ma5A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 42.0 | 3.57e-01 | 83.0% | 46.7% |
| 1g5bB00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.57 | 45.0 | 3.16e-01 | 100.0% | 45.2% |
| 1wjtA00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.56 | 45.0 | 3.63e-01 | 88.7% | 48.5% |
| 1t5oA01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.56 | 43.0 | 3.31e-01 | 90.6% | 42.6% |
| 2r5sA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 43.0 | 3.72e-01 | 88.7% | 60.2% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.55 | 39.0 | 3.51e-01 | 79.2% | 54.1% |
| 4mdcD02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 43.0 | 3.39e-01 | 90.6% | 69.9% |
| 2ii2A04 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.55 | 42.0 | 3.82e-01 | 96.2% | 60.8% |
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.54 | 43.0 | 3.44e-01 | 88.7% | 75.7% |
| 6jlzA01 | 1.20.120.1070 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain | 0.54 | 44.0 | 3.66e-01 | 100.0% | 78.7% |
| 4ielA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 42.0 | 3.32e-01 | 88.7% | 63.8% |
| 3tbiB02 | 6.10.140.1670 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 41.0 | 3.31e-01 | 81.1% | 91.0% |
| 2a0uB01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.53 | 42.0 | 3.08e-01 | 92.5% | 38.7% |
| 1bccA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.53 | 41.0 | 2.99e-01 | 100.0% | 87.7% |
| 5fhiA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 41.0 | 3.17e-01 | 90.6% | 53.2% |
| 2x64A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 41.0 | 3.31e-01 | 90.6% | 70.8% |
| 7bi4A01 | 1.25.40.70 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) | 0.52 | 42.0 | 3.02e-01 | 100.0% | 27.4% |
| 4g1tA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 37.0 | 3.59e-01 | 83.0% | 70.5% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.50 | 41.0 | 3.73e-01 | 100.0% | 85.2% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3474508 | 8001.1.1.0 ↗ | alpha arrays › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen | 0.81 | 71.0 | 6.70e-01 | 100.0% | 86.2% |
| 4994576 | 101.35.1.36 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › PF27234 | 0.70 | 55.0 | 5.16e-01 | 90.6% | 78.3% |
| 4968998 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.68 | 56.0 | 5.48e-01 | 100.0% | 86.7% |
| 3788546 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 53.0 | 3.42e-01 | 100.0% | 23.9% |
| 3717244 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 55.0 | 5.11e-01 | 100.0% | 78.6% |
| 3507677 | 101.35.1.25 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › PF26215 | 0.63 | 56.0 | 4.64e-01 | 100.0% | 59.1% |
| 3580853 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 51.0 | 4.89e-01 | 98.1% | 86.2% |
| 3581844 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.62 | 53.0 | 3.91e-01 | 100.0% | 66.7% |
| 3607327 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 52.0 | 5.07e-01 | 100.0% | 90.0% |
| 3886394 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 50.0 | 4.32e-01 | 100.0% | 63.2% |
| 3573791 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.61 | 51.0 | 3.57e-01 | 100.0% | 66.7% |
| 4955292 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 50.0 | 3.86e-01 | 100.0% | 48.9% |
| 3479514 | 101.1.2.318 ↗ | alpha arrays › HTH › HTH › winged helix domain › HSD3 | 0.60 | 50.0 | 4.68e-01 | 98.1% | 78.6% |
| 3914038 | 109.4.1.369 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAPC1 | 0.60 | 53.0 | 3.91e-01 | 100.0% | 50.0% |
| 3494078 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 48.0 | 4.64e-01 | 98.1% | 87.7% |
| 3932395 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 47.0 | 4.72e-01 | 94.3% | 96.4% |
| 3925823 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.59 | 49.0 | 4.01e-01 | 100.0% | 80.0% |
| 4605392 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.59 | 49.0 | 3.57e-01 | 100.0% | 41.8% |
| 4125293 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.58 | 47.0 | 3.51e-01 | 100.0% | 44.1% |
| 4088927 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.57 | 47.0 | 3.51e-01 | 100.0% | 43.6% |
| 4446314 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.57 | 47.0 | 2.79e-01 | 100.0% | 14.8% |
| 3943035 | 639.2.1.0 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) | 0.57 | 49.0 | 4.63e-01 | 100.0% | 90.8% |
| 4112733 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.56 | 46.0 | 3.46e-01 | 100.0% | 44.4% |
| 4051640 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.56 | 44.0 | 3.33e-01 | 100.0% | 44.8% |
| 5075274 | 2006.1.4.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 | 0.53 | 40.0 | 2.98e-01 | 88.7% | 40.0% |
| 1117795 | 316.1.1.25 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap_D4 | 0.53 | 43.0 | 2.98e-01 | 98.1% | 59.4% |
| 4996294 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.52 | 41.0 | 3.47e-01 | 90.6% | 90.5% |
| 3738103 | 184.1.1.0 ↗ | alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N | 0.51 | 44.0 | 3.92e-01 | 100.0% | 77.5% |
| 3269094 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.51 | 42.0 | 4.08e-01 | 96.2% | 81.7% |
| 3353941 | 1134.1.1.7 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › ALA1 | 0.51 | 43.0 | 4.09e-01 | 100.0% | 80.0% |
| 4971640 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 43.0 | 2.62e-01 | 100.0% | 17.4% |
| 3901917 | 1134.1.1.7 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › ALA1 | 0.50 | 44.0 | 4.02e-01 | 100.0% | 82.9% |
| 3200033 | 109.4.1.2268 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28359 | 0.50 | 41.0 | 2.76e-01 | 98.1% | 40.0% |
D3
medium
residues 304-427
Domain cluster:
rep: nonstructural_protein_NS1__YP_009553675__Mouse_kidney_parvovirus__2316143__D310-427
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01057.24 best | Parvo_NS1 | 59.2 | 4.70e-16 | 100.0% | 36.2% |
| PF00519.24 | PPV_E1_C | 40.7 | 2.30e-10 | 99.2% | 42.6% |