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nonstructural_protein_2
Euk-VirRotavirus_C
nonstructural_protein_2__YP_392488__Rotavirus_C__36427
Identity
- Accession:
- YP_392488 ↗
- Protein ID:
- nonstructural_protein_2
- Kingdom:
- euk
Quality
71.8
mean pLDDT
Taxonomy
Orthornavirae›
Duplornaviricota›
Resentoviricetes›
Reovirales›
Sedoreoviridae›
Rotavirus›
Rotavirus_C
TaxID: 36427
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-140
D2
high
residues 156-311
Domain cluster:
rep: NSP2__YP_008136236__Rotavirus_G_chicken_03V0567_DEU_2003__994995__D167-294
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02509.20 best | Rota_NS35_C | 296.0 | 1.10e-88 | 100.0% | 93.1% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gu0A02 | 3.30.428.20 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Rotavirus NSP2 fragment, C-terminal domain | 0.96 | 88.0 | 8.76e-01 | 98.7% | 92.5% |
| 2r7cA02 | 3.30.428.20 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Rotavirus NSP2 fragment, C-terminal domain | 0.89 | 83.0 | 8.31e-01 | 97.4% | 97.5% |
| 2l9dA00 | 3.30.70.2340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF12112 family, DUF3579 | 0.52 | 27.0 | 3.22e-01 | 71.8% | 71.3% |
| 1z21A00 | 1.10.10.1000 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Type III secretion system virulence factor YopR, core domain | 0.50 | 26.0 | 3.18e-01 | 73.1% | 78.1% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 161775 | 312.1.1.3 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › Rota_NS35_C | 0.96 | 88.0 | 8.71e-01 | 98.7% | 91.3% |
| 2426541 | 312.1.1.3 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › Rota_NS35_C | 0.92 | 87.0 | 8.44e-01 | 98.7% | 93.0% |
| 3284992 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.57 | 22.0 | 2.89e-01 | 94.9% | 60.2% |
| 3455220 | 3012.1.1.4 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 | 0.54 | 32.0 | 3.96e-01 | 72.4% | 100.0% |
| 3633568 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 45.0 | 3.53e-01 | 91.0% | 87.3% |
| 4954762 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.52 | 27.0 | 3.02e-01 | 71.8% | 59.2% |
| 4986542 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.51 | 26.0 | 3.02e-01 | 74.4% | 67.6% |
| 3603258 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.51 | 29.0 | 2.93e-01 | 75.6% | 53.5% |