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nonstructural_protein_NS-2
Euk-VirCulex_pipiens_densovirus
nonstructural_protein_NS-2__YP_002887626__Culex_pipiens_densovirus__185638
Identity
- Accession:
- YP_002887626 ↗
- Protein ID:
- nonstructural_protein_NS-2
- Kingdom:
- euk
Quality
65.6
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Quintoviricetes›
Piccovirales›
Parvoviridae›
Protoambidensovirus›
Culex_pipiens_densovirus
TaxID: 185638
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-120
Domain cluster:
rep: nonstructural_protein_NS2__YP_007003824__Pseudoplusia_includens_densovirus__185637__D11-125
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF27719.1 best | Parvo_NS2 | 61.9 | 8.00e-17 | 99.2% | 40.0% |
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.63 | 41.0 | 4.85e-01 | 72.0% | 98.7% |
| 6i3mE01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.61 | 44.0 | 4.20e-01 | 74.6% | 80.3% |
| 1yjgA00 | 1.20.120.240 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6 | 0.61 | 46.0 | 4.22e-01 | 79.7% | 82.2% |
| 1dqeA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.60 | 39.0 | 3.73e-01 | 82.2% | 56.9% |
| 3kavA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.58 | 40.0 | 4.29e-01 | 73.7% | 82.4% |
| 4m0mA04 | 1.20.1270.440 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.57 | 42.0 | 4.29e-01 | 77.1% | 94.0% |
| 2scpA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.57 | 43.0 | 3.89e-01 | 82.2% | 67.2% |
| 1oahA02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.57 | 44.0 | 4.16e-01 | 82.2% | 73.2% |
| 2j9wB00 | 1.20.120.1130 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain | 0.56 | 39.0 | 4.22e-01 | 79.7% | 84.8% |
| 3b5oA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.56 | 46.0 | 3.76e-01 | 90.7% | 89.1% |
| 1v4aA01 | 1.10.4050.10 | Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE | 0.56 | 32.0 | 3.39e-01 | 100.0% | 60.6% |
| 1tdpA00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.55 | 35.0 | 3.62e-01 | 72.0% | 66.7% |
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 35.0 | 4.20e-01 | 79.7% | 100.0% |
| 2l81A00 | 1.20.120.830 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Serine-rich domain | 0.55 | 42.0 | 3.64e-01 | 78.8% | 77.8% |
| 1u8vB03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.55 | 42.0 | 3.42e-01 | 80.5% | 73.2% |
| 7sbeA01 | 1.10.132.70 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.54 | 43.0 | 3.54e-01 | 85.6% | 84.8% |
| 1rjgA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 40.0 | 3.04e-01 | 78.0% | 95.2% |
| 4akfA01 | 3.40.1090.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain | 0.54 | 41.0 | 3.01e-01 | 82.2% | 45.9% |
| 1xzpA02 | 1.20.120.430 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 | 0.53 | 39.0 | 3.48e-01 | 75.4% | 87.3% |
| 2zs0A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 43.0 | 4.11e-01 | 88.1% | 85.7% |
| 2w9yA00 | 1.20.120.1100 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 43.0 | 4.09e-01 | 85.6% | 91.2% |
| 3buxB01 | 1.20.930.20 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain | 0.53 | 38.0 | 3.74e-01 | 74.6% | 87.6% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 37.0 | 3.96e-01 | 78.0% | 84.3% |
| 6pd2A01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.53 | 37.0 | 2.95e-01 | 72.0% | 85.5% |
| 3m9vA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.52 | 38.0 | 3.50e-01 | 77.1% | 77.1% |
| 4akgA16 | 1.10.8.720 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Region D6 of dynein motor | 0.52 | 40.0 | 3.68e-01 | 85.6% | 73.9% |
| 2vm6A00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.52 | 41.0 | 3.90e-01 | 86.4% | 95.8% |
| 3pntA01 | 1.10.10.1660 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nicotine adenine dinucleotide glycohydrolase, helical linker domain | 0.51 | 27.0 | 3.17e-01 | 83.9% | 74.7% |
| 3bjbD00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 37.0 | 3.35e-01 | 78.0% | 63.2% |
| 5jfqB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 38.0 | 2.83e-01 | 77.1% | 96.4% |
| 1wgwA00 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.51 | 34.0 | 3.64e-01 | 72.0% | 80.8% |
| 4akgA06 | 1.10.8.710 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Dynein motor, AAA1 domain, small subdomain | 0.51 | 35.0 | 3.68e-01 | 72.9% | 78.5% |
| 2k3qA00 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.51 | 38.0 | 3.89e-01 | 81.4% | 89.8% |
| 3n00A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.51 | 43.0 | 3.74e-01 | 93.2% | 95.1% |
| 4agsB04 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 35.0 | 3.41e-01 | 71.2% | 94.0% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4940075 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.65 | 39.0 | 4.71e-01 | 70.3% | 90.0% |
| 3286912 | 632.18.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 | 0.62 | 38.0 | 4.21e-01 | 71.2% | 75.8% |
| 4374650 | 601.54.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › low CO2-inducible protein LCI1 › low CO2-inducible protein LCI1 | 0.62 | 44.0 | 4.06e-01 | 74.6% | 63.9% |
| 5014074 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.62 | 42.0 | 4.81e-01 | 74.6% | 95.3% |
| 1097268 | 633.19.1.1 ↗ | alpha bundles › Bromodomain-like › Hypothetical protein lpg2422 helical bundle domain › Hypothetical protein lpg2422 helical bundle domain › DUF6842 | 0.61 | 42.0 | 4.77e-01 | 75.4% | 97.6% |
| 3697275 | 192.29.1.104 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF4149 | 0.61 | 45.0 | 3.96e-01 | 78.0% | 80.4% |
| 3475282 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.60 | 41.0 | 4.71e-01 | 94.1% | 97.6% |
| 3785508 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.60 | 33.0 | 4.07e-01 | 71.2% | 85.3% |
| 3770817 | 601.1.2.47 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › MARVEL | 0.60 | 42.0 | 4.11e-01 | 72.9% | 75.4% |
| 3864123 | 633.21.1.10 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › MARVEL | 0.60 | 42.0 | 4.11e-01 | 72.9% | 75.4% |
| 5046322 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.59 | 36.0 | 4.26e-01 | 70.3% | 90.0% |
| 4298601 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.58 | 42.0 | 3.20e-01 | 74.6% | 93.1% |
| 1097270 | 633.19.1.1 ↗ | alpha bundles › Bromodomain-like › Hypothetical protein lpg2422 helical bundle domain › Hypothetical protein lpg2422 helical bundle domain › DUF6842 | 0.58 | 42.0 | 4.35e-01 | 74.6% | 90.7% |
| 3523264 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.58 | 42.0 | 4.06e-01 | 74.6% | 76.9% |
| 4982105 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.57 | 34.0 | 4.06e-01 | 70.3% | 90.7% |
| 5043412 | 1025.1.1.0 ↗ | alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain | 0.57 | 41.0 | 4.20e-01 | 73.7% | 85.2% |
| 3620303 | 101.1.1.66 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_5 | 0.56 | 27.0 | 3.38e-01 | 76.3% | 74.3% |
| 3454663 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.56 | 43.0 | 3.15e-01 | 83.1% | 46.3% |
| 4303951 | 601.54.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › low CO2-inducible protein LCI1 › low CO2-inducible protein LCI1 | 0.56 | 40.0 | 3.93e-01 | 73.7% | 74.4% |
| 3613513 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.56 | 45.0 | 3.42e-01 | 88.1% | 73.4% |
| 3897485 | 633.1.1.0 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain | 0.56 | 45.0 | 4.60e-01 | 89.0% | 96.5% |
| 3499218 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.55 | 39.0 | 4.04e-01 | 72.0% | 77.3% |
| 4360987 | 601.4.1.34 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › SHR3_chaperone | 0.55 | 41.0 | 3.57e-01 | 77.1% | 82.3% |
| 3291137 | 7002.1.1.8 ↗ | alpha duplicates or obligate multimers › TM trimerization region of envelope glycoprotein B › TM trimerization region of envelope glycoprotein B › TM trimerization region of envelope glycoprotein B › DUF1206 | 0.55 | 43.0 | 3.85e-01 | 83.9% | 88.5% |
| 3606235 | 604.7.1.0 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A | 0.54 | 33.0 | 2.90e-01 | 71.2% | 42.4% |
| 3097451 | 4963.1.2.1 ↗ | alpha complex topology › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal domain in vesicular stomatitis virus RNA polymerase L › Mononeg_RNA_pol | 0.54 | 42.0 | 2.97e-01 | 83.1% | 94.1% |
| 3974601 | 601.3.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain | 0.54 | 38.0 | 3.94e-01 | 78.0% | 78.2% |
| 3190417 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.54 | 40.0 | 4.13e-01 | 77.1% | 90.9% |
| 3209235 | 4177.2.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › Inhibitor of kappaB kinase beta dimerization domain › Inhibitor of kappaB kinase beta dimerization domain | 0.54 | 40.0 | 3.07e-01 | 78.0% | 69.6% |
| 3463325 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.52 | 45.0 | 3.52e-01 | 94.1% | 83.9% |
| 3443112 | 150.3.1.33 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › DUF594 | 0.52 | 43.0 | 3.41e-01 | 89.8% | 94.5% |
| 3250479 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.52 | 38.0 | 3.08e-01 | 75.4% | 73.2% |
| 3237525 | 101.1.1.290 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PBC | 0.52 | 36.0 | 3.58e-01 | 72.0% | 94.4% |
| 3453588 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.51 | 41.0 | 3.33e-01 | 86.4% | 50.0% |
| 4946129 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.51 | 41.0 | 3.34e-01 | 87.3% | 94.5% |
| 3600021 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.51 | 42.0 | 3.00e-01 | 90.7% | 77.5% |
| 3264752 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.51 | 36.0 | 3.39e-01 | 73.7% | 89.0% |
D2
high
residues 149-256