←Back to structures

nonstructural_protein_NS2

Euk-Vir

Guereza_hepacivirus

nonstructural_protein_NS2__YP_009684358__Guereza_hepacivirus__1354498

Identity

Accession:
YP_009684358 ↗
Protein ID:
nonstructural_protein_NS2
Kingdom:
euk

Quality

58.8 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Flasuviricetes› Amarillovirales› Flaviviridae› Hepacivirus› Guereza_hepacivirus

TaxID: 1354498

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-149
PDB
D2 medium residues 165-206
PDB
Domain cluster: rep: putative_NS2_peptide__YP_009227301__Human_pegivirus_2__1729141__D193-239
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.80 58.0 4.49e-01 78.6% 41.1%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.73 59.0 4.21e-01 90.5% 62.4%
1ng4A02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.58 41.0 2.93e-01 78.6% 23.6%
3cp2A02 2.40.30.260 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.56 40.0 3.17e-01 78.6% 69.7%
1fhgA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 40.0 3.16e-01 81.0% 42.2%
4j27A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 41.0 3.30e-01 81.0% 47.2%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.56 42.0 3.41e-01 92.9% 52.0%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.55 40.0 3.20e-01 81.0% 77.5%
1cjxA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 45.0 3.18e-01 100.0% 85.3%
1dx5I02 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.53 34.0 3.67e-01 76.2% 84.8%
2yvsA02 3.30.70.2560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 40.0 3.70e-01 88.1% 91.5%
4kktA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.52 39.0 3.20e-01 92.9% 78.1%
3l09A03 3.30.70.2670 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 36.0 3.57e-01 78.6% 72.3%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.51 36.0 3.46e-01 78.6% 90.2%
4gc1A01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.50 34.0 2.75e-01 76.2% 31.7%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4950522 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.71 51.0 4.74e-01 78.6% 80.0%
5042597 4.15.1.0 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like 0.71 51.0 3.96e-01 76.2% 63.3%
4427237 3374.1.1.2 ↗ a+b complex topology › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › Hydrolase_2 0.70 53.0 3.72e-01 83.3% 28.9%
4130681 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.69 49.0 4.12e-01 78.6% 58.7%
4142364 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.61 44.0 3.95e-01 76.2% 67.7%
1877510 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.59 42.0 3.50e-01 81.0% 43.5%
6702 244.1.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO 0.58 41.0 3.35e-01 78.6% 37.5%
1811230 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.56 40.0 2.88e-01 78.6% 23.8%
4948624 3110.1.1.0 ↗ a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.55 40.0 2.73e-01 78.6% 21.7%
4029041 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.55 39.0 2.97e-01 81.0% 41.7%
5059518 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 39.0 3.02e-01 81.0% 45.5%
2444013 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.53 38.0 3.07e-01 81.0% 45.7%
2879522 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.53 39.0 3.23e-01 88.1% 82.6%
3791694 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.53 39.0 3.22e-01 83.3% 60.0%
4147290 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.53 36.0 3.31e-01 76.2% 66.2%
5059893 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 36.0 2.84e-01 78.6% 46.4%
3838015 319.3.1.3 ↗ beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › DUF7494 0.51 35.0 2.77e-01 85.7% 88.5%
2323843 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 35.0 2.96e-01 78.6% 45.9%
3239541 327.11.2.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.50 37.0 2.79e-01 83.3% 32.8%