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nonstructural_protein_NS3

Euk-Vir

Langat_virus

nonstructural_protein_NS3__NP_740299__Langat_virus__11085

Identity

Accession:
NP_740299 ↗
Protein ID:
nonstructural_protein_NS3
Kingdom:
euk

Quality

82.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-82
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00949.28 best Peptidase_S7 30.6 4.00e-07 80.2% 45.8%
D2 high residues 113-168
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00949.28 best Peptidase_S7 43.1 5.10e-11 94.6% 34.4%
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l6pA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.95 80.0 6.31e-01 100.0% 47.6%
2wv9A01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.90 83.0 5.71e-01 100.0% 32.6%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.87 66.0 5.96e-01 100.0% 61.6%
4m9fA00 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.82 75.0 4.98e-01 100.0% 28.0%
1p3cA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.78 64.0 5.18e-01 100.0% 47.6%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.78 63.0 4.93e-01 100.0% 42.6%
1lvbA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.76 63.0 5.10e-01 100.0% 48.1%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 62.0 5.09e-01 100.0% 61.7%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 55.0 5.04e-01 100.0% 63.5%
2ey4D00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.71 59.0 5.39e-01 100.0% 69.3%
1ep5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 58.0 5.05e-01 100.0% 59.3%
2rceA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 61.0 4.99e-01 100.0% 57.5%
3cp7B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 61.0 5.01e-01 100.0% 53.3%
4lk4A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 58.0 4.53e-01 100.0% 52.0%
4b6eB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 58.0 3.97e-01 100.0% 27.7%
3u28C00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.66 57.0 4.87e-01 100.0% 59.8%
2v3mA00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.66 52.0 4.51e-01 100.0% 54.3%
2eqnA01 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.65 54.0 4.76e-01 100.0% 62.1%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 55.0 4.92e-01 100.0% 65.9%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 37.0 3.98e-01 100.0% 66.7%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 38.0 3.91e-01 100.0% 63.6%
2sfaA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 52.0 4.53e-01 100.0% 61.5%
5cemA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 52.0 4.83e-01 100.0% 78.1%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.60 46.0 3.08e-01 85.7% 66.0%
2oo4A02 3.30.70.3310 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 43.0 3.54e-01 80.4% 55.0%
2dy1A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 48.0 4.20e-01 100.0% 68.0%
4mboA01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 45.0 3.43e-01 87.5% 64.9%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 42.0 4.27e-01 82.1% 89.5%
8b6zA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 48.0 4.38e-01 100.0% 78.0%
5amhA00 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.57 51.0 4.13e-01 100.0% 75.5%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 48.0 4.19e-01 100.0% 69.9%
3kewA01 2.40.30.130 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 47.0 4.24e-01 100.0% 66.7%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 45.0 4.23e-01 100.0% 70.9%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.56 45.0 4.17e-01 100.0% 72.3%
1ub4A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 3.53e-01 83.9% 64.1%
5cenA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 48.0 4.35e-01 100.0% 74.4%
2cnzA00 2.60.40.1570 Mainly Beta › Sandwich › Immunoglobulin-like › Dr adhesin 0.56 46.0 3.72e-01 100.0% 78.0%
2v90C00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.55 43.0 3.68e-01 87.5% 84.9%
3lnnA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.54 45.0 3.96e-01 100.0% 64.8%
2y23A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.73e-01 100.0% 52.9%
3cnwA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 37.0 2.94e-01 80.4% 51.8%
2g6gA02 2.40.240.50 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases 0.51 40.0 2.97e-01 100.0% 98.5%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 4.04e-01 100.0% 90.5%
3a8kA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.50 36.0 3.25e-01 80.4% 69.3%
2nyyA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 44.0 3.06e-01 100.0% 36.4%
8ciwA02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.50 39.0 3.21e-01 98.2% 80.5%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.50 33.0 3.12e-01 89.3% 54.2%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None 0.95 90.0 6.12e-01 100.0% 33.7%
169988 1.1.5.6 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S7 0.94 89.0 6.03e-01 100.0% 32.4%
220 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.78 64.0 4.26e-01 100.0% 23.3%
22087 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.78 60.0 3.85e-01 100.0% 18.8%
5077063 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.75 62.0 5.68e-01 100.0% 69.3%
4053143 1.1.5.6 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S7 0.75 62.0 4.80e-01 91.1% 52.5%
5041607 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 60.0 5.54e-01 100.0% 70.3%
5048051 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.73 60.0 5.22e-01 100.0% 58.4%
4059005 1.1.17.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S7 0.73 64.0 4.13e-01 100.0% 33.1%
3962616 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.73 63.0 4.53e-01 100.0% 32.9%
4259810 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.72 59.0 5.31e-01 100.0% 65.0%
4945432 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 60.0 5.27e-01 100.0% 62.4%
4969578 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 59.0 5.43e-01 100.0% 70.3%
4964309 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.71 60.0 5.51e-01 100.0% 71.6%
4942485 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.71 62.0 5.55e-01 100.0% 73.8%
4991129 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 57.0 5.10e-01 100.0% 61.9%
3996398 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 58.0 5.09e-01 100.0% 61.2%
4933363 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.70 57.0 5.25e-01 100.0% 68.9%
5035997 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 57.0 5.39e-01 100.0% 74.3%
4525111 1.1.7.126 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_S7 0.70 62.0 5.51e-01 100.0% 96.2%
3654499 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.70 61.0 4.76e-01 100.0% 52.0%
3959311 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.70 50.0 4.28e-01 78.6% 46.3%
4513211 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.70 59.0 4.75e-01 100.0% 64.2%
5038467 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 57.0 5.19e-01 100.0% 67.1%
3305298 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.69 60.0 4.76e-01 100.0% 65.0%
3959338 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.69 50.0 3.72e-01 78.6% 30.3%
4499041 1.1.5.57 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.69 59.0 4.08e-01 100.0% 38.5%
3907927 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.69 59.0 5.24e-01 100.0% 71.8%
3883172 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.69 59.0 5.03e-01 100.0% 64.2%
4886128 613.1.1.1 alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c 0.68 58.0 4.78e-01 100.0% 64.5%
5041618 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.68 59.0 5.03e-01 100.0% 60.6%
5000784 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.67 56.0 4.74e-01 100.0% 54.0%
4026390 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 56.0 4.30e-01 100.0% 40.0%
1161323 1.1.5.14 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S29 0.67 58.0 4.08e-01 100.0% 30.9%
3996145 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.66 56.0 4.38e-01 100.0% 55.4%
3321067 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 56.0 4.89e-01 100.0% 62.2%
3674829 1.1.13.61 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Gar1 0.66 57.0 5.36e-01 100.0% 91.4%
4263415 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.66 55.0 4.81e-01 100.0% 61.1%
3272018 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.65 56.0 4.64e-01 100.0% 53.4%
3388880 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.65 55.0 4.51e-01 100.0% 50.0%
5017568 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.65 56.0 5.04e-01 100.0% 70.0%
5010595 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 54.0 4.87e-01 100.0% 70.6%
5051893 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.65 55.0 5.00e-01 100.0% 73.8%
2869319 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.65 56.0 4.72e-01 100.0% 58.2%
3232791 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.65 53.0 4.20e-01 100.0% 41.5%
5041953 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 46.0 4.58e-01 76.8% 73.3%
3669715 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.65 47.0 3.38e-01 78.6% 25.9%
5059785 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 54.0 4.92e-01 100.0% 70.0%
3710481 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.64 54.0 4.73e-01 100.0% 62.2%
5002426 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.64 55.0 4.83e-01 100.0% 70.6%
3596757 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 55.0 4.54e-01 100.0% 53.3%
3714390 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.63 54.0 4.24e-01 100.0% 44.8%
3957231 1.1.16.0 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.63 45.0 3.70e-01 78.6% 40.0%
4172447 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 53.0 4.87e-01 100.0% 77.3%
4162532 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.61 47.0 4.40e-01 100.0% 68.0%
3483841 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.61 50.0 4.26e-01 100.0% 53.4%
4954736 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 50.0 4.54e-01 100.0% 65.9%
4105457 11.1.1.90 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IalB 0.60 51.0 3.89e-01 100.0% 39.2%
3688796 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 49.0 4.33e-01 100.0% 61.1%
4129680 1.1.7.50 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.59 48.0 4.07e-01 100.0% 61.8%
3976133 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 48.0 4.20e-01 100.0% 57.9%
5010302 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 47.0 4.26e-01 100.0% 67.1%
2036627 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.58 42.0 3.97e-01 80.4% 67.6%
3267250 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 4.30e-01 100.0% 87.5%
3252482 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.55 46.0 3.99e-01 100.0% 64.2%
5038027 319.3.1.1 beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › AMIN 0.54 44.0 3.80e-01 100.0% 97.0%
3905463 11.1.1.565 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CRLF2_D1 0.53 43.0 3.80e-01 100.0% 60.0%
3269635 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.75e-01 100.0% 59.0%
3533770 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.53 33.0 2.76e-01 100.0% 32.4%
1218856 11.1.1.127 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL6Ra-bind 0.52 42.0 3.71e-01 100.0% 58.1%
3229812 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.51 41.0 3.57e-01 100.0% 57.3%
4989278 12.5.1.0 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.51 41.0 3.32e-01 98.2% 72.8%
D3 high residues 181-321
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07652.21 best Flavi_DEAD 214.6 8.40e-64 94.3% 89.2%
D4 high residues 338-476
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00271.38 best Helicase_C 27.6 4.20e-06 82.7% 87.3%
D5 medium residues 523-618
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20907.3 best Flav_NS3-hel_C 68.0 1.10e-18 100.0% 66.0%