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nonstructural_protein_NS3
Euk-VirNorway_rat_hepacivirus_2
nonstructural_protein_NS3__YP_009325407__Norway_rat_hepacivirus_2__1562039
Identity
- Accession:
- YP_009325407 ↗
- Protein ID:
- nonstructural_protein_NS3
- Kingdom:
- euk
Quality
87.9
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Flasuviricetes›
Amarillovirales›
Flaviviridae›
Hepacivirus›
Norway_rat_hepacivirus_2
TaxID: 1562039
Cluster
View cluster (30 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-169
Domain cluster:
rep: 100_kDa_protein__YP_008130303__Citrus_vein_enation_virus__1301220__D379-571
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02907.22 best | Peptidase_S29 | 104.2 | 7.90e-30 | 84.3% | 92.6% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4b6eB01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.85 | 82.0 | 7.58e-01 | 100.0% | 82.7% |
| 3otpA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.79 | 68.0 | 6.32e-01 | 89.8% | 88.7% |
| 4ri0A01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.74 | 64.0 | 6.02e-01 | 90.4% | 87.4% |
| 2wv9A01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.74 | 67.0 | 6.64e-01 | 94.6% | 96.5% |
| 3u28C00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.73 | 28.0 | 3.85e-01 | 91.6% | 66.3% |
| 4m9fA00 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.72 | 65.0 | 6.08e-01 | 94.6% | 93.0% |
| 1wczA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.68 | 36.0 | 4.33e-01 | 100.0% | 75.7% |
| 2kd2A01 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.62 | 23.0 | 3.14e-01 | 100.0% | 63.1% |
| 1boqA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.62 | 38.0 | 4.76e-01 | 100.0% | 97.2% |
| 1p3cA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 36.0 | 4.40e-01 | 100.0% | 90.5% |
| 5hmaA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 34.0 | 4.26e-01 | 73.5% | 87.5% |
| 4rqyA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 35.0 | 4.08e-01 | 89.8% | 81.3% |
| 2qmiA02 | 2.40.128.210 | Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain | 0.55 | 25.0 | 3.11e-01 | 90.4% | 66.0% |
| 6toaE01 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.55 | 32.0 | 4.01e-01 | 99.4% | 96.9% |
| 2sfaA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 30.0 | 3.95e-01 | 80.7% | 98.9% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1161323 | 1.1.5.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S29 | 0.85 | 82.0 | 7.95e-01 | 100.0% | 92.3% |
| 5023947 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.80 | 64.0 | 6.40e-01 | 83.1% | 84.7% |
| 2028446 | 1.1.5.21 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S31 | 0.79 | 72.0 | 6.33e-01 | 94.6% | 96.1% |
| 140973 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.78 | 68.0 | 6.02e-01 | 90.4% | 80.2% |
| 4995689 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.78 | 67.0 | 6.25e-01 | 90.4% | 86.2% |
| 134018 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.77 | 67.0 | 6.80e-01 | 89.8% | 92.0% |
| 2429362 | 1.1.5.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S3 | 0.77 | 63.0 | 6.14e-01 | 100.0% | 78.3% |
| 3596793 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.76 | 65.0 | 5.29e-01 | 89.8% | 91.5% |
| 2142060 | 1.1.5.22 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S32 | 0.75 | 62.0 | 5.77e-01 | 100.0% | 70.8% |
| 5018347 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.75 | 65.0 | 6.72e-01 | 94.6% | 96.8% |
| 4974463 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.75 | 65.0 | 6.63e-01 | 92.8% | 92.6% |
| 3204035 | 1.1.17.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 | 0.75 | 70.0 | 5.39e-01 | 98.8% | 93.2% |
| None | — | 0.74 | 64.0 | 6.46e-01 | 92.8% | 89.8% | |
| 2095485 | 1.1.5.38 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C107 | 0.74 | 63.0 | 5.82e-01 | 89.8% | 87.5% |
| 1311889 | 1.1.5.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.73 | 66.0 | 5.71e-01 | 94.6% | 92.1% |
| 4620869 | 1.1.5.57 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 | 0.73 | 68.0 | 5.20e-01 | 99.4% | 87.2% |
| 5063379 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.72 | 69.0 | 6.73e-01 | 100.0% | 93.3% |
| 3409561 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.72 | 68.0 | 6.01e-01 | 100.0% | 93.0% |
| 5035938 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.72 | 65.0 | 5.76e-01 | 94.6% | 93.3% |
| 169988 | 1.1.5.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S7 | 0.72 | 62.0 | 6.18e-01 | 94.6% | 87.3% |
| None | — | 0.71 | 68.0 | 6.20e-01 | 100.0% | 87.6% | |
| 4247805 | 1.1.5.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin | 0.71 | 68.0 | 6.19e-01 | 100.0% | 85.8% |
| 4387060 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.71 | 68.0 | 6.14e-01 | 100.0% | 85.1% |
| None | — | 0.71 | 67.0 | 6.14e-01 | 100.0% | 86.9% | |
| None | — | 0.71 | 67.0 | 6.11e-01 | 100.0% | 87.0% | |
| None | — | 0.71 | 67.0 | 6.08e-01 | 100.0% | 86.6% | |
| 2526961 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.71 | 67.0 | 6.02e-01 | 100.0% | 85.5% |
| 3106034 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.71 | 67.0 | 5.84e-01 | 100.0% | 83.3% |
| 1096110 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.71 | 67.0 | 6.08e-01 | 100.0% | 87.0% |
| 4031177 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.71 | 68.0 | 6.12e-01 | 100.0% | 85.5% |
| 3439936 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.71 | 67.0 | 5.48e-01 | 100.0% | 95.1% |
| 4883897 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.70 | 67.0 | 5.77e-01 | 100.0% | 77.5% |
| 2512790 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.70 | 67.0 | 5.78e-01 | 100.0% | 77.2% |
| 1826904 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.70 | 66.0 | 5.68e-01 | 100.0% | 76.6% |
| 3960060 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.70 | 63.0 | 6.04e-01 | 94.6% | 93.0% |
| 22087 | 1.1.5.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin | 0.70 | 66.0 | 5.70e-01 | 100.0% | 76.7% |
| 4882551 | 1.1.5.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pico_P2A | 0.70 | 53.0 | 5.65e-01 | 93.4% | 87.9% |
| 220 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.69 | 65.0 | 5.93e-01 | 100.0% | 89.3% |
| 22093 | 1.1.5.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin | 0.69 | 65.0 | 5.94e-01 | 100.0% | 88.4% |
| 3262549 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.68 | 63.0 | 5.58e-01 | 98.8% | 90.4% |
| 3448643 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.67 | 63.0 | 5.82e-01 | 100.0% | 93.7% |
| 3246847 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.66 | 56.0 | 5.32e-01 | 89.8% | 84.6% |
D2
high
residues 196-319
Domain cluster:
rep: B962L__YP_009703129__African_swine_fever_virus__10497__D53-65_81-193
D3
high
residues 333-472
Domain cluster:
rep: B962L__YP_009703129__African_swine_fever_virus__10497__D237-425
D4
medium
residues 485-615
Domain cluster:
rep: nonstructural_protein_NS3__YP_009325397__Norway_rat_hepacivirus_1__1562038__D486-614
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22027.2 best | NS3_helicase_C | 33.7 | 5.30e-08 | 97.7% | 66.7% |