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nonstructural_protein_NS4B

Euk-Vir

Donggang_virus

nonstructural_protein_NS4B__YP_009259535__Donggang_virus__985683

Identity

Accession:
YP_009259535 ↗
Protein ID:
nonstructural_protein_NS4B
Kingdom:
euk

Quality

81.6 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Flasuviricetes› Amarillovirales› Flaviviridae› Orthoflavivirus› Donggang_virus

TaxID: 985683

Cluster

View cluster (29 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 41-168
PDB
Domain cluster: rep: non-structural_protein_NS4b__NP_776008__Yellow_fever_virus__11089__D37-154
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01349.23 best Flavi_NS4B 147.4 7.40e-43 99.2% 48.0%
D2 high residues 194-253
PDB
Domain cluster: rep: NS4B__NP_722538__Murray_Valley_encephalitis_virus__11079__D192-250
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01349.23 best Flavi_NS4B 43.5 3.90e-11 91.7% 20.6%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ryaA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.74 49.0 3.30e-01 70.0% 19.8%
7zm7601 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.72 62.0 4.57e-01 100.0% 40.1%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.69 50.0 4.88e-01 76.7% 80.0%
4g1tA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.68 58.0 4.72e-01 100.0% 50.4%
5jc3A02 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.66 53.0 4.26e-01 91.7% 68.3%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 53.0 4.10e-01 100.0% 88.3%
4p63D00 3.40.910.10 Alpha Beta › 3-Layer(aba) Sandwich › Deoxyhypusine Synthase › Deoxyhypusine synthase 0.61 45.0 2.88e-01 80.0% 89.1%
1sw6A00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.61 43.0 2.83e-01 75.0% 69.3%
2fo7A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 46.0 3.69e-01 96.7% 39.0%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 45.0 4.54e-01 81.7% 80.6%
2vyiA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 45.0 3.68e-01 96.7% 41.4%
4bx9C00 1.10.150.780 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Vps16, C-terminal region 0.59 46.0 4.08e-01 90.0% 84.2%
6gy8A01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.58 49.0 3.15e-01 100.0% 58.4%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 35.0 3.64e-01 70.0% 71.4%
6qm7J00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.54 40.0 2.88e-01 83.3% 29.4%
2vpkA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.54 42.0 3.46e-01 88.3% 73.0%
1mw9X02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.52 44.0 3.32e-01 100.0% 61.3%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 36.0 3.43e-01 75.0% 65.3%
2xgsB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 39.0 3.75e-01 95.0% 72.6%
2kj8A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.50 41.0 3.46e-01 100.0% 80.5%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4939591 3579.1.1.0 ↗ extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J 0.72 64.0 4.70e-01 100.0% 41.5%
5012562 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 55.0 4.14e-01 88.3% 48.3%
5058631 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.68 45.0 4.48e-01 71.7% 64.6%
3396867 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.66 44.0 3.80e-01 70.0% 44.0%
4405928 5086.1.1.196 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_YknX 0.65 44.0 4.20e-01 70.0% 91.4%
3482082 3476.1.1.0 ↗ alpha arrays › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain 0.64 43.0 4.13e-01 70.0% 95.7%
3741609 109.58.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › DNA repair protein Rev1 C-terminal domain › DNA repair protein Rev1 C-terminal domain › REV1_C 0.62 44.0 3.79e-01 73.3% 84.2%
4927488 6049.1.1.0 ↗ alpha bundles › PH0832-like › PH0832-like › PH0832-like 0.60 41.0 3.89e-01 93.3% 58.1%
3587225 604.39.1.0 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.60 49.0 3.62e-01 95.0% 84.7%
3775900 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 48.0 3.41e-01 95.0% 96.2%
3834375 109.4.1.1274 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long 0.59 46.0 3.13e-01 96.7% 21.6%
3672805 109.4.1.2679 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, TPR_24, TPR_At1g68980 0.57 47.0 2.89e-01 100.0% 19.8%
3646235 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.57 45.0 4.10e-01 91.7% 64.7%
4464531 7000.1.1.1 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › HTH_OrfB_IS605 0.56 38.0 3.40e-01 70.0% 56.5%
2825526 109.4.1.1300 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_16, TPR_19 0.56 46.0 4.35e-01 100.0% 80.5%
3222274 198.1.1.3 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.55 40.0 3.53e-01 81.7% 49.0%
5014976 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.55 45.0 3.03e-01 100.0% 20.7%
5002913 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.54 37.0 2.75e-01 73.3% 55.3%
3296860 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.54 44.0 2.93e-01 93.3% 20.7%
4096162 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.52 39.0 3.40e-01 90.0% 51.0%
4182480 2004.1.1.71 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IPPT 0.51 44.0 3.02e-01 100.0% 68.7%
3482935 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.51 39.0 3.45e-01 85.0% 82.2%