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nonstructural_protein_NS4B

Euk-Vir

Hepacivirus_I

nonstructural_protein_NS4B__YP_009679031__Hepacivirus_I__2008768

Identity

Accession:: YP_009679031 ↗
Protein ID:: nonstructural_protein_NS4B
Kingdom:: euk

Quality

67.5 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Flasuviricetes› Amarillovirales› Flaviviridae› Hepacivirus› Hepacivirus_rhabdomysis

TaxID: 2008768

Cluster

View cluster (26 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-122

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01001.25 best	HCV_NS4b	55.2	1.00e-14	87.8%	44.3%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1sz9C00	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.66	44.0	4.13e-01	70.4%	55.0%
4gpkF02	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.63	52.0	4.06e-01	88.7%	53.8%
3ubcA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.57	39.0	3.75e-01	70.4%	66.4%
2zcxA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.55	43.0	3.62e-01	85.2%	79.0%
1gcvA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.53	38.0	3.53e-01	73.9%	65.7%
1cg5B00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.52	37.0	3.46e-01	73.9%	66.0%
2yskA00	1.10.490.110	Mainly Alpha › Orthogonal Bundle › Globin-like › Uncharacterized conserved protein DUF2267	0.50	37.0	3.45e-01	77.4%	98.6%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5046289	192.5.1.0 ↗	alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat	0.70	49.0	4.72e-01	72.2%	91.5%
5010817	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.69	47.0	4.06e-01	70.4%	75.6%
3824988	109.3.1.339 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Vps35	0.63	44.0	3.83e-01	70.4%	50.9%
3592085	4015.1.1.1 ↗	alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1	0.63	50.0	3.88e-01	86.1%	58.8%
3703139	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.59	49.0	3.87e-01	93.9%	69.2%
4544657	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.58	46.0	4.04e-01	84.3%	77.6%
3232833	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.55	41.0	3.05e-01	78.3%	77.3%
5026442	604.5.1.1 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU_div	0.55	40.0	3.46e-01	74.8%	95.6%
3712847	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.55	40.0	3.31e-01	76.5%	85.6%
3623181	106.1.1.1 ↗	alpha arrays › Globin-like › Globin-like › Globin-like › Globin	0.52	37.0	3.29e-01	73.0%	64.8%
51101	106.1.1.0 ↗	alpha arrays › Globin-like › Globin-like › Globin-like	0.52	36.0	3.37e-01	70.4%	71.1%
3516155	109.4.1.414 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MMS19_N	0.51	42.0	3.17e-01	91.3%	45.8%
4927417	4121.1.1.1 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA	0.50	43.0	3.45e-01	95.7%	77.5%

D2 high residues 126-201_217-244

PDB