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nonstructural_protein_NSS
Euk-VirRio_Grande_virus
nonstructural_protein_NSS__YP_010086078__Rio_Grande_virus__629740
Identity
- Accession:
- YP_010086078 ↗
- Protein ID:
- nonstructural_protein_NSS
- Kingdom:
- euk
Quality
86.4
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Hareavirales›
Phenuiviridae›
Phlebovirus›
Rio_Grande_virus
TaxID: 629740
Cluster
View cluster (55 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-70
Domain cluster:
rep: nonstructural_protein__YP_009346037__Uriurana_virus__1055750__D4-72
D2
high
residues 88-242
Domain cluster:
rep: nonstructural_protein__YP_009141016__Bhanja_virus__1213620__D62-228
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF11073.14 best | NSs | 45.2 | 1.20e-11 | 85.8% | 46.4% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iygA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.70 | 33.0 | 3.57e-01 | 89.0% | 51.9% |
| 3rkvA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.65 | 35.0 | 3.60e-01 | 89.7% | 53.7% |
| 7yu4A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.60 | 46.0 | 3.90e-01 | 80.0% | 89.1% |
| 2ebfX02 | 1.20.140.180 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.60 | 39.0 | 4.07e-01 | 96.8% | 70.6% |
| 2rekA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 41.0 | 4.02e-01 | 83.9% | 63.4% |
| 3nxcA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 40.0 | 3.91e-01 | 84.5% | 65.5% |
| 4xt1A00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.56 | 44.0 | 3.67e-01 | 85.8% | 89.0% |
| 1zcaA02 | 1.10.400.10 | Mainly Alpha › Orthogonal Bundle › GI Alpha 1, domain 2-like › GI Alpha 1, domain 2-like | 0.55 | 33.0 | 3.67e-01 | 94.2% | 73.8% |
| 4nooB00 | 1.10.8.1160 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.55 | 28.0 | 3.48e-01 | 77.4% | 78.9% |
| 4dloB02 | 1.25.40.610 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 33.0 | 3.73e-01 | 89.7% | 78.6% |
| 5tk8A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.54 | 47.0 | 4.41e-01 | 94.2% | 89.5% |
| 4nn1A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 40.0 | 3.68e-01 | 83.9% | 57.6% |
| 1s35A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 31.0 | 3.71e-01 | 79.4% | 88.1% |
| 3dwlG00 | 1.25.40.190 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Actin-related protein 2/3 complex subunit 5 | 0.51 | 31.0 | 3.53e-01 | 96.8% | 81.6% |
| 3kh1A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.51 | 43.0 | 3.99e-01 | 92.3% | 82.6% |
| 1xx7A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.50 | 43.0 | 4.21e-01 | 94.2% | 91.3% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.93 | 62.0 | 7.49e-01 | 72.9% | 97.2% | |
| 4822198 | 1183.1.1.1 ↗ | alpha complex topology › Rift Valley fever virus non-structural protein NS-S › Rift Valley fever virus non-structural protein NS-S › Rift Valley fever virus non-structural protein NS-S › NSs | 0.92 | 73.0 | 8.07e-01 | 96.8% | 97.7% |
| 2323915 | 1183.1.1.1 ↗ | alpha complex topology › Rift Valley fever virus non-structural protein NS-S › Rift Valley fever virus non-structural protein NS-S › Rift Valley fever virus non-structural protein NS-S › NSs | 0.86 | 80.0 | 7.76e-01 | 96.8% | 89.2% |
| 5060592 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.57 | 37.0 | 3.85e-01 | 87.7% | 69.0% |
| 3177557 | 196.1.1.0 ↗ | alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS | 0.55 | 43.0 | 4.27e-01 | 82.6% | 91.5% |
| 3656329 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.54 | 35.0 | 3.27e-01 | 80.6% | 52.6% |
| 3608985 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 39.0 | 2.75e-01 | 89.7% | 24.3% |
| 4937823 | 3558.1.1.0 ↗ | alpha arrays › HSDR subunit helical domain › HSDR subunit helical domain › HSDR subunit helical domain | 0.51 | 32.0 | 3.97e-01 | 80.0% | 99.0% |