nonstructural_protein_P4

Euk-Vir

Onyong-nyong_virus

nonstructural_protein_P4__NP_740706__Onyong-nyong_virus__2169701

Identity

80.8 mean pLDDT

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Togaviridae› Alphavirus› Onyong-nyong_virus

TaxID: 2169701

View cluster (32 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-101

PDB

Domain cluster: rep: nonstructural_protein_nsP4__NP_740690__Mayaro_virus__59301__D37-123

D2 medium residues 106-135_498-611

PDB

Domain cluster: rep: replication_protein_2a__YP_006576519__Amazon_lily_mild_mottle_virus__1195163__D529-657

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	72.4	4.90e-20	86.1%	23.2%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2do3A01	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.59	19.0	3.14e-01	74.3%	76.5%
4iggB02	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.56	35.0	3.80e-01	70.8%	72.7%
1u84A00	1.10.340.20	Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain	0.54	27.0	3.45e-01	87.5%	84.0%
3ee4A00	1.10.620.20	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A	0.53	41.0	3.31e-01	82.6%	66.4%
3l8rA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.53	35.0	4.06e-01	71.5%	95.1%
1s62A00	3.30.1150.10	Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 ›	0.51	23.0	2.70e-01	78.5%	54.9%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3237307	4177.1.1.0 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like	0.54	38.0	3.38e-01	72.2%	87.6%
4026613	509.1.1.0 ↗	alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain	0.54	35.0	4.08e-01	93.8%	95.0%
4619139	633.23.1.21 ↗	alpha bundles › Bromodomain-like › Claudin › Claudin › TM140	0.52	40.0	3.77e-01	81.9%	85.7%

D3 medium residues 234-341_378-456

PDB

Domain cluster: rep: ORF_1b__YP_003289291__Strawberry_pallidosis-associated_virus__227507__D117-174_213-235_276-309

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	85.4	5.50e-24	58.3%	23.6%
PF00978.27	RdRP_2	49.2	5.40e-13	42.2%	17.1%

D4 medium residues 342-377_457-497

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009345057__Xinzhou_nematode_virus_7__1923775__D238-258_337-401

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	39.5	4.60e-10	54.5%	9.1%