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nonstructural_protein
Euk-VirChandiru_virus
nonstructural_protein__YP_004347995__Chandiru_virus__629725
Identity
- Accession:
- YP_004347995 ↗
- Protein ID:
- nonstructural_protein
- Kingdom:
- euk
Quality
81.5
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Hareavirales›
Phenuiviridae›
Phlebovirus›
Chandiru_virus
TaxID: 629725
Cluster
View cluster (55 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-75
Domain cluster:
rep: nonstructural_protein__YP_009346037__Uriurana_virus__1055750__D4-72
D2
medium
residues 87-125_170-186_205-246
Domain cluster:
rep: nonstructural_protein__YP_010086197__Mona_Grita_virus__2559111__D90-138_205-243
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5xfaA04 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.50 | 39.0 | 4.17e-01 | 86.7% | 100.0% |
D3
medium
residues 126-169_187-204
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bwtA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.57 | 40.0 | 2.57e-01 | 74.2% | 24.0% |
| 3fhdA01 | 1.20.120.860 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Herpesvirus alkaline exonuclease, N-terminal domain | 0.56 | 38.0 | 2.99e-01 | 71.0% | 42.6% |
| 2jvwA01 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.54 | 36.0 | 3.65e-01 | 96.8% | 71.7% |
| 5dajD00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 42.0 | 3.09e-01 | 100.0% | 43.8% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3688841 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.62 | 44.0 | 4.66e-01 | 79.0% | 85.5% |
| 3852459 | 109.4.1.761 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Telomere_reg-2 | 0.58 | 41.0 | 2.61e-01 | 75.8% | 28.8% |
| 3414083 | 109.4.1.371 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RTP1_C1 | 0.56 | 38.0 | 2.40e-01 | 74.2% | 22.8% |
| 4644501 | 3090.1.1.2 ↗ | few secondary structure elements › Microplusin › Microplusin › Microplusin › PF30034 | 0.55 | 37.0 | 3.55e-01 | 90.3% | 58.7% |
| 5007751 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.54 | 40.0 | 2.60e-01 | 80.6% | 56.6% |
| 4985507 | 604.10.1.0 ↗ | alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac | 0.53 | 38.0 | 3.43e-01 | 79.0% | 70.0% |
| 4890988 | 2004.1.1.827 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DYNC2H1_AAA_dom | 0.50 | 38.0 | 2.78e-01 | 80.6% | 34.5% |