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nonstructural_protein

Euk-Vir

Eulipotyphla_protoparvovirus_1

nonstructural_protein__YP_009130650__Eulipotyphla_protoparvovirus_1__2170148

Identity

Accession:
YP_009130650 ↗
Protein ID:
nonstructural_protein
Kingdom:
euk

Quality

83.6 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Quintoviricetes› Piccovirales› Parvoviridae› Protoparvovirus› Protoparvovirus_eulipotyphla1

TaxID: 2170148

Cluster

View cluster (29 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-216
PDB
Domain cluster: rep: NS1__YP_009552695__Rhinolophus_pusillus_bocaparvovirus_1__2053079__D4-183
D2 high residues 390-558
PDB
Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF01057.24 best Parvo_NS1 195.1 1.70e-57 95.3% 55.7%
PF00519.24 PPV_E1_C 41.2 1.60e-10 75.7% 37.0%
PF19263.6 DUF5906 40.2 6.80e-10 62.1% 91.1%
D3 medium residues 279-344
PDB
Domain cluster: rep: non-structural_protein_1__YP_009272913__Mink_bocavirus_1__2259808__D352-409
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01057.24 best Parvo_NS1 26.6 4.00e-06 98.5% 20.7%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u0jA01 1.10.10.950 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.80 61.0 6.55e-01 81.8% 98.2%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.68 55.0 5.02e-01 90.9% 80.0%
2oyoA02 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.67 60.0 4.84e-01 100.0% 54.4%
1zbtA01 6.10.140.1950 Special › Helix non-globular › Helix Hairpins › 0.66 38.0 3.53e-01 80.3% 45.8%
3m6jA01 1.20.1260.40 Mainly Alpha › Up-down Bundle › Ferritin › 0.58 42.0 3.54e-01 77.3% 88.9%
1x4pA00 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.58 45.0 4.58e-01 90.9% 87.9%
2efjA01 1.10.1200.270 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Methyltransferase, alpha-helical capping domain 0.57 45.0 3.69e-01 90.9% 84.3%
2vkjA00 1.20.58.2030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 40.0 3.40e-01 84.8% 46.2%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.56 44.0 3.73e-01 84.8% 79.4%
2e8gA01 1.20.1440.150 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.56 41.0 3.42e-01 80.3% 80.6%
2l9bA00 1.25.40.630 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 38.0 3.44e-01 72.7% 54.9%
3ay8A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 47.0 3.79e-01 100.0% 83.8%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.52 43.0 4.10e-01 89.4% 88.0%
6qumQ00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.51 36.0 3.54e-01 75.8% 86.5%
6xm1A02 3.90.830.10 Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a 0.50 42.0 3.61e-01 95.5% 86.7%
6lumB02 1.10.1060.10 Mainly Alpha › Orthogonal Bundle › Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2 › Alpha-helical ferredoxin 0.50 44.0 3.59e-01 100.0% 79.7%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4880005 10.2.1.16 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_NS1 0.86 69.0 5.13e-01 86.4% 36.1%
5009771 2.21.1.5 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › PF27234 0.68 58.0 4.32e-01 95.5% 39.4%
5002559 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.67 57.0 4.30e-01 95.5% 40.6%
4969516 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.65 51.0 5.32e-01 86.4% 93.3%
4955688 2.21.1.5 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › PF27234 0.64 52.0 3.94e-01 92.4% 36.4%
4112500 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.63 44.0 4.68e-01 87.9% 90.9%
3686422 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.62 49.0 4.30e-01 90.9% 61.9%
3606284 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.61 53.0 4.93e-01 98.5% 77.6%
3232628 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.59 50.0 4.23e-01 97.0% 71.3%
3288637 605.1.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.57 40.0 3.85e-01 72.7% 72.0%
3838803 4168.1.1.0 ↗ alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain 0.55 41.0 4.15e-01 89.4% 80.0%
3353121 4156.1.1.4 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.55 46.0 3.57e-01 98.5% 71.5%
3726788 109.27.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.54 41.0 4.06e-01 89.4% 81.4%
3868871 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 40.0 2.94e-01 90.9% 74.6%
3580914 604.12.1.2 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.51 43.0 3.93e-01 92.4% 78.8%