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nonstructural_protein

Euk-Vir

Astrovirus_Er_SZAL6_HUN_2011

nonstructural_protein__YP_009154705__Astrovirus_Er_SZAL6_HUN_2011__1671382

Identity

Accession:
YP_009154705 ↗
Protein ID:
nonstructural_protein
Kingdom:
euk

Quality

61.9 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Stellavirales› Astroviridae› Astrovirus_Er/SZAL6/HUN/2011

TaxID: 1671382

Cluster

View cluster (19 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-94
PDB
D2 high residues 450-603
PDB
Domain cluster: rep: 100_kDa_protein__YP_008130303__Citrus_vein_enation_virus__1301220__D379-571
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF05579.20 best Peptidase_S32 34.8 1.50e-08 98.7% 43.1%
PF13365.13 Trypsin_2 53.1 8.30e-14 79.2% 100.0%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.89 85.0 7.61e-01 100.0% 89.2%
4ri0A01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.86 83.0 7.48e-01 100.0% 88.9%
2ijd101 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.85 81.0 7.61e-01 100.0% 93.9%
1wxrA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.81 77.0 6.31e-01 100.0% 77.4%
5y2dA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.79 46.0 5.23e-01 100.0% 75.0%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.78 43.0 5.31e-01 74.0% 83.2%
4b6eB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.78 75.0 6.70e-01 100.0% 86.6%
2qf4A01 2.40.10.340 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 0.73 30.0 4.22e-01 95.5% 77.2%
1zyoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 43.0 5.25e-01 100.0% 90.1%
1agjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 42.0 4.54e-01 96.8% 68.7%
1p3cA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 42.0 5.05e-01 71.4% 87.6%
2sfaA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 39.0 5.04e-01 99.4% 96.7%
2j5uA02 2.40.10.340 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 0.67 31.0 4.23e-01 100.0% 82.1%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 43.0 5.21e-01 88.3% 96.2%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 32.0 4.24e-01 70.1% 95.2%
3l6pA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 38.0 4.49e-01 97.4% 100.0%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.55 26.0 3.19e-01 98.7% 67.0%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 25.0 3.39e-01 84.4% 91.8%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 22.0 3.14e-01 85.1% 87.7%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.51 34.0 3.89e-01 90.3% 92.7%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 28.0 3.61e-01 70.8% 94.3%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.50 23.0 2.82e-01 99.4% 63.4%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.50 26.0 3.11e-01 80.5% 74.5%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
134018 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.95 91.0 8.93e-01 100.0% 93.2%
3415399 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.91 88.0 7.65e-01 100.0% 84.7%
None — 0.91 87.0 7.63e-01 100.0% 86.9%
2526961 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.91 87.0 7.51e-01 100.0% 85.1%
1096110 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.91 87.0 7.58e-01 100.0% 87.0%
None — 0.91 87.0 7.59e-01 100.0% 87.0%
None — 0.90 87.0 7.56e-01 100.0% 86.6%
3448106 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.90 87.0 7.17e-01 100.0% 84.8%
3989070 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.90 87.0 7.53e-01 100.0% 92.7%
5072499 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.90 86.0 7.76e-01 100.0% 87.0%
140973 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.90 86.0 7.38e-01 100.0% 79.7%
5063188 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.89 86.0 7.50e-01 100.0% 84.7%
3532116 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.89 86.0 7.50e-01 100.0% 86.0%
3280955 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.89 86.0 7.37e-01 100.0% 86.7%
3448847 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.89 86.0 6.85e-01 100.0% 92.4%
3421481 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.89 85.0 6.88e-01 100.0% 78.1%
5063379 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.89 86.0 8.05e-01 100.0% 95.0%
4247805 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.89 86.0 7.53e-01 100.0% 86.3%
3106034 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.89 85.0 7.16e-01 100.0% 82.0%
4600945 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.89 85.0 7.39e-01 100.0% 85.9%
4324118 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.89 85.0 7.14e-01 100.0% 89.6%
4205419 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.89 85.0 7.25e-01 100.0% 88.7%
4329871 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.89 85.0 7.83e-01 100.0% 91.1%
4031177 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.89 85.0 7.47e-01 100.0% 85.5%
4387060 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.88 85.0 7.43e-01 100.0% 85.6%
None — 0.88 85.0 7.50e-01 100.0% 87.6%
22093 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.88 84.0 7.40e-01 100.0% 88.8%
3281996 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.88 84.0 7.46e-01 100.0% 92.4%
220 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.88 84.0 7.38e-01 100.0% 88.8%
3433009 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.88 84.0 6.93e-01 100.0% 73.3%
3432441 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.88 85.0 6.93e-01 100.0% 82.4%
3434538 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.88 84.0 7.37e-01 100.0% 87.0%
3443528 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.88 84.0 7.36e-01 100.0% 87.0%
3899289 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.88 84.0 6.67e-01 100.0% 88.2%
3783835 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.88 83.0 6.77e-01 100.0% 82.6%
3900731 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.88 84.0 6.69e-01 100.0% 89.8%
3428386 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.87 84.0 6.92e-01 100.0% 73.2%
3950281 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.87 84.0 7.19e-01 100.0% 84.4%
4028981 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.87 83.0 7.25e-01 100.0% 89.5%
3462061 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.87 83.0 7.30e-01 100.0% 86.0%
3447254 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.87 83.0 7.23e-01 100.0% 85.5%
3436414 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.87 83.0 7.36e-01 100.0% 86.2%
3435448 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.87 83.0 6.99e-01 100.0% 93.7%
22087 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.87 83.0 6.92e-01 100.0% 84.1%
3816110 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.87 83.0 7.16e-01 100.0% 81.3%
4822902 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.86 78.0 7.72e-01 93.5% 98.7%
3258480 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.86 82.0 6.37e-01 100.0% 91.7%
3377696 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.86 82.0 7.38e-01 100.0% 91.5%
3962616 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.86 67.0 6.44e-01 79.9% 87.6%
3447771 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.86 81.0 6.85e-01 100.0% 88.7%
3443107 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.85 81.0 6.99e-01 100.0% 76.9%
3420143 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.85 64.0 6.35e-01 77.3% 91.3%
3672433 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.85 76.0 5.98e-01 93.5% 58.3%
260 1.1.5.22 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S32 0.85 75.0 6.75e-01 97.4% 71.2%
2142060 1.1.5.22 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S32 0.84 74.0 6.62e-01 97.4% 69.3%
3448643 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.84 80.0 7.15e-01 100.0% 93.7%
1308507 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.84 80.0 7.42e-01 100.0% 86.6%
4881914 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.84 80.0 7.18e-01 100.0% 97.5%
2472950 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.83 79.0 7.39e-01 100.0% 94.6%
5037776 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.83 79.0 6.85e-01 100.0% 97.7%
3739220 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.82 78.0 6.88e-01 100.0% 91.6%
3184103 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.82 78.0 6.38e-01 100.0% 98.8%
2141908 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.81 77.0 7.04e-01 100.0% 96.9%
4852372 1.1.5.19 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C30 0.81 75.0 6.88e-01 97.4% 86.4%
1099000 1.1.5.19 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C30 0.80 75.0 6.98e-01 98.1% 88.1%
1161323 1.1.5.14 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S29 0.78 75.0 7.01e-01 100.0% 96.7%
3957702 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.76 55.0 5.87e-01 74.0% 83.7%
3428387 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.76 67.0 6.34e-01 100.0% 78.9%
3248403 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.65 50.0 5.37e-01 93.5% 92.6%
1688248 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.56 30.0 3.93e-01 98.7% 97.5%
5034888 9.23.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.55 28.0 3.30e-01 98.7% 70.0%
5044391 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 18.0 3.17e-01 87.7% 94.0%
3272576 11.1.1.820 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-sand_ComC_2nd 0.52 29.0 3.32e-01 74.0% 72.7%
5044394 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 18.0 2.87e-01 85.1% 93.3%
1565067 9.23.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › Lipocalin_8 0.50 33.0 3.68e-01 98.1% 84.3%
D3 high residues 832-897
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bl7A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.75 61.0 5.82e-01 90.9% 94.9%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.75 65.0 6.00e-01 92.4% 84.0%
2do9A01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.74 61.0 5.65e-01 90.9% 94.0%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.69 56.0 5.43e-01 90.9% 96.1%
2oo2A00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.67 52.0 4.99e-01 84.8% 81.6%
1lq7A00 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.67 53.0 5.29e-01 86.4% 95.5%
2gs4A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.65 54.0 4.06e-01 90.9% 57.0%
4fm3A00 1.20.1270.390 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.65 49.0 4.40e-01 83.3% 68.4%
3bxjA02 1.10.506.20 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › 0.64 54.0 4.83e-01 100.0% 89.8%
2c41C01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.63 44.0 3.52e-01 75.8% 87.2%
4kjmB01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.61 45.0 4.65e-01 83.3% 96.8%
2qqyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 44.0 3.55e-01 78.8% 90.6%
3m7gA02 1.10.8.1010 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.59 46.0 4.20e-01 89.4% 85.3%
1zylA03 1.20.1270.170 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 41.0 3.64e-01 75.8% 86.4%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 38.0 3.62e-01 71.2% 59.0%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4591251 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.74 57.0 5.22e-01 81.8% 82.4%
5007277 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.73 57.0 5.27e-01 84.8% 85.9%
3217606 192.29.1.172 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PF29678 0.69 54.0 3.98e-01 86.4% 63.9%
3236224 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.69 56.0 4.71e-01 90.9% 81.7%
4433166 3281.1.1.6 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,NADH_dehy_S2_C 0.69 56.0 3.51e-01 89.4% 28.9%
5060846 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.68 51.0 4.95e-01 81.8% 88.0%
3970705 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.66 49.0 4.64e-01 80.3% 87.5%
4595958 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.65 51.0 4.37e-01 86.4% 87.3%
5028218 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.65 51.0 5.19e-01 86.4% 93.8%
3171754 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.65 46.0 3.98e-01 75.8% 84.8%
4981740 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.64 51.0 5.15e-01 87.9% 95.4%
1212542 191.1.1.1 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1 0.57 42.0 3.46e-01 81.8% 94.7%
3999857 632.6.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit 0.57 41.0 4.05e-01 81.8% 90.7%
3269341 101.1.10.22 ↗ alpha arrays › HTH › HTH › Cyclin-like › ORC6 0.53 43.0 3.88e-01 87.9% 71.1%
3786123 627.1.1.1 ↗ alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9 0.51 39.0 3.03e-01 92.4% 90.3%
D4 medium residues 274-394_416-431
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.64 46.0 4.47e-01 74.5% 89.0%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.61 41.0 4.67e-01 83.9% 96.9%
7akwA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.60 47.0 4.04e-01 82.5% 75.2%
2b5dX02 1.20.1430.10 Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain 0.60 30.0 3.33e-01 70.1% 57.0%
2cmrA00 1.20.58.1860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 41.0 3.65e-01 72.3% 93.8%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.57 36.0 4.37e-01 70.1% 100.0%
1ki1B01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.56 36.0 3.16e-01 74.5% 44.2%
3hi0A03 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.54 48.0 4.29e-01 100.0% 96.5%
1zkrB00 1.20.920.50 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.53 36.0 3.62e-01 70.8% 85.5%
4xaiB02 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.53 39.0 3.50e-01 77.4% 82.1%
4fxdA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.53 37.0 3.57e-01 71.5% 85.6%
3rzeA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 40.0 3.24e-01 81.8% 85.4%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.51 37.0 3.90e-01 73.7% 81.5%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3924719 371.1.1.0 ↗ few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 0.65 44.0 5.08e-01 70.1% 98.9%
4285620 5000.4.1.5 ↗ alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain › PF27742 0.63 46.0 3.96e-01 74.5% 92.6%
3240353 3745.1.1.1 ↗ alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.61 42.0 3.03e-01 70.8% 75.3%
3691743 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.58 42.0 4.36e-01 75.9% 85.6%
4943622 7064.1.1.0 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 0.57 41.0 4.05e-01 73.7% 81.4%
3506523 109.4.1.912 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_KDM8_N 0.57 39.0 4.02e-01 70.8% 80.7%
4004398 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.57 45.0 3.60e-01 85.4% 64.8%
4305528 109.4.1.222 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DCB 0.57 40.0 3.43e-01 72.3% 47.3%
4973788 7064.1.1.1 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.56 40.0 4.01e-01 74.5% 78.6%
5037195 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.54 40.0 3.41e-01 74.5% 64.2%
None — 0.53 45.0 3.44e-01 97.8% 39.4%
5071852 3651.1.1.1 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.53 45.0 4.09e-01 90.5% 85.8%
5026255 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.53 38.0 3.49e-01 72.3% 77.1%
4943370 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 43.0 3.13e-01 89.8% 53.3%
5026238 1075.1.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.52 41.0 3.56e-01 84.7% 99.1%
4929352 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.51 36.0 3.23e-01 73.0% 65.9%
4024116 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.50 36.0 3.25e-01 74.5% 71.3%