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nonstructural_protein
Euk-VirChrysanthemum_stem_necrosis_virus
nonstructural_protein__YP_009162643__Chrysanthemum_stem_necrosis_virus__83871
Identity
- Accession:
- YP_009162643 ↗
- Protein ID:
- nonstructural_protein
- Kingdom:
- euk
Quality
71.7
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Elliovirales›
Tospoviridae›
Orthotospovirus›
Chrysanthemum_stem_necrosis_virus
TaxID: 83871
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 337-432
Domain cluster:
rep: NSs__YP_001740043__Tomato_zonate_spot_virus__460926__D339-437
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23017.3 best | WIV_2 | 124.0 | 3.20e-36 | 89.6% | 98.8% |
D2
medium
residues 21-49_83-244
Domain cluster:
rep: nonstructural_NSs_protein__YP_009505542__Watermelon_bud_necrosis_virus__76052__D1-47_104-243
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03231.19 best | Tospov_NS-S_N | 182.6 | 1.60e-53 | 85.3% | 47.0% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6mv2A01 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 28.0 | 3.74e-01 | 82.2% | 85.3% |
| 4pbdA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 29.0 | 3.81e-01 | 82.7% | 88.2% |
| 2lgnA00 | 2.60.40.2850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 18.0 | 3.08e-01 | 98.4% | 83.3% |
| 2xcmC00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 27.0 | 3.75e-01 | 82.2% | 95.7% |
| 2qziA00 | 3.40.1720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Streptococcus thermophilus LMG 18311 protein like › Streptococcus thermophilus LMG 18311 protein like | 0.54 | 26.0 | 3.31e-01 | 81.7% | 79.2% |
| 2ebeA00 | 3.30.70.2290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF3208) | 0.54 | 27.0 | 3.42e-01 | 94.2% | 82.1% |
| 4feiA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 28.0 | 3.61e-01 | 86.9% | 96.1% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.50 | 32.0 | 3.87e-01 | 90.1% | 97.6% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5079697 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 27.0 | 3.85e-01 | 83.2% | 97.5% |
| 196062 | 304.142.1.1 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein TTHA0061 › Hypothetical protein TTHA0061 › DUF3208 | 0.54 | 27.0 | 3.42e-01 | 94.2% | 82.1% |
| 3597820 | 1.1.7.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 | 0.54 | 30.0 | 3.72e-01 | 89.0% | 88.7% |
| 4671096 | 304.4.1.54 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless | 0.51 | 29.0 | 3.40e-01 | 96.9% | 79.2% |
D3
medium
residues 50-82_245-305
Domain cluster:
rep: nonstructural_silencing_protein__YP_004421856__Groundnut_ringspot_and_Tomato_chlorotic_spot_virus_reassortant__1027232__D51-77_242-304
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03231.19 best | Tospov_NS-S_N | 62.4 | 5.60e-17 | 67.0% | 17.7% |
| PF03231.19 | Tospov_NS-S_N | 25.6 | 8.80e-06 | 38.3% | 10.0% |