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nonstructural_protein
Euk-VirUngulate_bocaparvovirus_6
nonstructural_protein__YP_009259490__Ungulate_bocaparvovirus_6__1864484
Identity
- Accession:
- YP_009259490 ↗
- Protein ID:
- nonstructural_protein
- Kingdom:
- euk
Quality
70.6
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Quintoviricetes›
Piccovirales›
Parvoviridae›
Bocaparvovirus›
bovine_bocaparvovirus_2
TaxID: 1864484
Cluster
View cluster (44 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-276
Domain cluster:
rep: NS1__YP_009507375__Chipmunk_parvovirus__56820__D1-203
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22419.3 best | HBoV_NS1-like_N | 203.7 | 4.70e-60 | 64.6% | 71.1% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kw3A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.91 | 88.0 | 8.68e-01 | 100.0% | 95.1% |
| 6usmB01 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.74 | 43.0 | 5.65e-01 | 91.3% | 100.0% |
| 1m55A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.71 | 51.0 | 5.87e-01 | 100.0% | 96.9% |
| 5t0oA02 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.70 | 30.0 | 4.51e-01 | 91.3% | 95.1% |
| 1r9wA00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.66 | 30.0 | 4.07e-01 | 99.2% | 79.7% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.60 | 19.0 | 3.29e-01 | 92.1% | 85.5% |
| 1pbuA00 | 3.30.70.1010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain | 0.60 | 29.0 | 3.58e-01 | 92.1% | 70.4% |
| 2v5yA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 22.0 | 3.38e-01 | 72.4% | 79.4% |
| 1nc7A00 | 2.60.290.11 | Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like | 0.59 | 22.0 | 3.17e-01 | 72.0% | 69.0% |
| 4h3wA02 | 2.60.120.1260 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 25.0 | 3.21e-01 | 74.4% | 65.8% |
| 2eddA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 23.0 | 3.24e-01 | 70.9% | 79.5% |
| 7y8sB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 20.0 | 3.09e-01 | 72.4% | 85.1% |
| 4cyuA00 | 3.30.70.560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK | 0.53 | 32.0 | 3.95e-01 | 90.2% | 95.5% |
| 2govA01 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.52 | 31.0 | 3.67e-01 | 96.9% | 84.4% |
| 1tdjA03 | 3.40.1020.10 | Alpha Beta › 3-Layer(aba) Sandwich › Biosynthetic Threonine Deaminase; domain 3 › Biosynthetic Threonine Deaminase; Domain 3 | 0.51 | 32.0 | 3.90e-01 | 97.2% | 95.7% |
| 3gk6A00 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.51 | 29.0 | 3.53e-01 | 96.9% | 86.3% |
| 2vqpA01 | 2.70.20.30 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › HRSV-S2 matrix protein, N-terminal domain | 0.51 | 19.0 | 2.78e-01 | 72.4% | 70.0% |
| 2abyA00 | 3.30.70.1980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF09406, DUF2004 | 0.51 | 23.0 | 3.21e-01 | 88.6% | 84.4% |
| 1flmA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 24.0 | 3.27e-01 | 96.1% | 86.9% |
| 1ks6A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.51 | 22.0 | 3.27e-01 | 94.9% | 92.5% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4959045 | 304.8.1.81 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P | 0.69 | 34.0 | 4.39e-01 | 92.9% | 79.3% |
| 1491756 | 304.55.1.9 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › PV_NSP1 | 0.69 | 59.0 | 5.99e-01 | 100.0% | 91.1% |
| 3874532 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.65 | 30.0 | 4.38e-01 | 75.6% | 95.7% |
| 4945880 | 304.42.1.1 ↗ | a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC | 0.63 | 33.0 | 4.27e-01 | 74.0% | 86.9% |
| 3470249 | 304.42.1.0 ↗ | a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC | 0.61 | 34.0 | 4.38e-01 | 72.8% | 93.1% |
| 4007464 | 304.55.1.19 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Inovirus_Gp2 | 0.57 | 37.0 | 4.31e-01 | 92.5% | 88.4% |
| 4160542 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.56 | 15.0 | 3.10e-01 | 74.4% | 94.8% |
| 3969698 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.55 | 27.0 | 3.70e-01 | 87.4% | 93.3% |
| 3235704 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.54 | 15.0 | 2.49e-01 | 77.2% | 61.9% |
| 3204836 | 2492.1.1.32 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › OTT_1508_deam | 0.52 | 26.0 | 3.31e-01 | 78.7% | 78.7% |
| 3573883 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.51 | 24.0 | 3.39e-01 | 85.4% | 89.6% |
| 4974834 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.51 | 27.0 | 3.03e-01 | 81.9% | 62.1% |
| 4944778 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.50 | 37.0 | 3.98e-01 | 98.8% | 87.3% |
D2
high
residues 318-376
Domain cluster:
rep: non-structural_protein_1__YP_009272913__Mink_bocavirus_1__2259808__D352-409
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01057.24 best | Parvo_NS1 | 22.1 | 9.50e-05 | 100.0% | 21.4% |
D3
high
residues 405-636
Domain cluster:
rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01057.24 best | Parvo_NS1 | 274.4 | 1.10e-81 | 85.3% | 66.8% |
| PF00519.24 | PPV_E1_C | 37.5 | 2.20e-09 | 83.2% | 38.1% |