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nonstructural_protein

Euk-Vir

Equine_parvovirus_H

nonstructural_protein__YP_009552775__Equine_parvovirus_H__2079554

Identity

Accession:
YP_009552775 ↗
Protein ID:
nonstructural_protein
Kingdom:
euk

Quality

77.7 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Quintoviricetes› Piccovirales› Parvoviridae› Equine_parvovirus_H

TaxID: 2079554

Cluster

View cluster (29 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-188
PDB
Domain cluster: rep: NS1__YP_009507375__Chipmunk_parvovirus__56820__D1-203
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08724.17 best Rep_N 54.3 2.10e-14 99.5% 72.6%
D2 medium residues 206-263
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u0jA01 1.10.10.950 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.82 69.0 7.10e-01 93.1% 100.0%
3pubA01 1.10.10.2400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain 0.71 54.0 5.07e-01 96.6% 66.2%
2gxaE01 1.10.10.510 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain 0.70 62.0 5.79e-01 100.0% 87.7%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 47.0 3.73e-01 96.6% 35.9%
6e6qA00 1.10.10.1100 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BFD-like [2Fe-2S]-binding domain 0.65 53.0 5.42e-01 94.8% 100.0%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.62 42.0 4.02e-01 87.9% 59.7%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.62 50.0 4.58e-01 96.6% 69.9%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 42.0 4.28e-01 84.5% 74.1%
4ar9A02 1.10.390.20 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › 0.59 46.0 3.45e-01 84.5% 71.1%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.58 43.0 4.00e-01 79.3% 60.8%
7y11B01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.58 36.0 3.57e-01 72.4% 57.1%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 43.0 4.28e-01 81.0% 82.3%
2d3dA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.55 48.0 4.27e-01 98.3% 94.0%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 47.0 4.06e-01 100.0% 82.5%
2efjA01 1.10.1200.270 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Methyltransferase, alpha-helical capping domain 0.55 46.0 3.63e-01 100.0% 82.8%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 45.0 4.23e-01 94.8% 84.9%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.54 44.0 4.29e-01 89.7% 96.9%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 43.0 4.08e-01 89.7% 98.6%
2pjqA02 1.20.58.1910 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 44.0 3.57e-01 93.1% 74.8%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.52 44.0 3.38e-01 94.8% 60.4%
3unoE00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 44.0 3.22e-01 100.0% 72.5%
1tu9A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 43.0 3.43e-01 100.0% 50.4%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4880005 10.2.1.16 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_NS1 0.90 81.0 5.77e-01 98.3% 36.7%
5035666 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 62.0 5.93e-01 91.4% 98.6%
3474508 8001.1.1.0 ↗ alpha arrays › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen 0.73 63.0 6.13e-01 100.0% 95.4%
4955688 2.21.1.5 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › PF27234 0.71 62.0 4.51e-01 100.0% 42.4%
5003639 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.69 60.0 4.44e-01 100.0% 38.7%
5009771 2.21.1.5 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › PF27234 0.68 60.0 4.33e-01 100.0% 37.1%
5002559 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.67 58.0 4.25e-01 100.0% 38.2%
3963155 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.63 43.0 3.98e-01 91.4% 56.0%
4887646 4030.1.1.2 ↗ alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › F-actin_cap_A 0.62 49.0 4.96e-01 96.6% 91.1%
3288637 605.1.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.58 44.0 4.06e-01 81.0% 69.3%
4974313 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 45.0 4.58e-01 87.9% 90.9%
4023419 3914.1.1.0 ↗ alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain 0.57 49.0 2.90e-01 100.0% 21.4%
3210486 3932.1.1.5 ↗ alpha bundles › CRISPR/Cas system-associated protein Csm6 6H domain › CRISPR/Cas system-associated protein Csm6 6H domain › CRISPR/Cas system-associated protein Csm6 6H domain › GATA_AreA 0.55 43.0 4.06e-01 100.0% 69.3%
4304388 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.54 37.0 3.22e-01 72.4% 45.0%
3980428 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.53 42.0 3.83e-01 91.4% 65.3%
3868871 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.53 45.0 3.14e-01 96.6% 73.7%
4886442 101.3.1.2 ↗ alpha arrays › HTH › XPC-binding domain › XPC-binding domain › STI1-HOP_DP 0.52 38.0 3.49e-01 91.4% 58.7%
3389783 5030.1.1.0 ↗ extended segments › Photosystem II reaction center protein L, PsbL › Photosystem II reaction center protein L, PsbL › Photosystem II reaction center protein L, PsbL 0.52 41.0 3.35e-01 86.2% 46.7%
D3 medium residues 327-452_488-506
PDB
Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF01057.24 best Parvo_NS1 184.5 2.90e-54 91.7% 46.5%
PF19263.6 DUF5906 31.9 2.60e-07 77.9% 92.0%