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nonstructural_protein
Euk-VirAlstroemeria_necrotic_streak_virus
nonstructural_protein__YP_010086065__Alstroemeria_necrotic_streak_virus__693450
Identity
- Accession:
- YP_010086065 ↗
- Protein ID:
- nonstructural_protein
- Kingdom:
- euk
Quality
70.6
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Elliovirales›
Tospoviridae›
Orthotospovirus›
Alstroemeria_necrotic_streak_virus
TaxID: 693450
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 333-442
Domain cluster:
rep: NSs__YP_001740043__Tomato_zonate_spot_virus__460926__D339-437
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23017.3 best | WIV_2 | 115.4 | 1.50e-33 | 78.2% | 98.8% |
D2
medium
residues 23-49_105-242
D3
medium
residues 50-104_243-329
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03231.19 best | Tospov_NS-S_N | 84.8 | 8.80e-24 | 64.1% | 26.5% |
| PF03231.19 | Tospov_NS-S_N | 54.0 | 2.00e-14 | 40.1% | 16.2% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hngA00 | 3.10.420.10 | Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like | 0.58 | 32.0 | 3.46e-01 | 73.9% | 61.6% |
| 2x9zA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 37.0 | 3.70e-01 | 70.4% | 91.9% |
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.53 | 30.0 | 3.59e-01 | 80.3% | 82.1% |
| 3fidA00 | 2.40.128.140 | Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein | 0.51 | 40.0 | 3.23e-01 | 84.5% | 94.9% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4652688 | 504.1.1.1 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB | 0.56 | 32.0 | 3.31e-01 | 73.9% | 57.9% |
| 3290484 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.55 | 43.0 | 3.96e-01 | 83.1% | 65.1% |
| 4940126 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.54 | 27.0 | 2.97e-01 | 72.5% | 55.8% |
| 4932446 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.51 | 28.0 | 3.03e-01 | 73.9% | 60.8% |