nonstructural_protein_sigma_NS

Euk-Vir

Baboon_orthoreovirus

nonstructural_protein_sigma_NS__YP_004769557__Baboon_orthoreovirus__75888

Identity

79.7 mean pLDDT

Orthornavirae› Duplornaviricota› Resentoviricetes› Reovirales› Spinareoviridae› Orthoreovirus› Baboon_orthoreovirus

TaxID: 75888

View cluster (11 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 78-160

PDB

Domain cluster: rep: sigma-NS_protein__YP_003199426__Mammalian_orthoreovirus_3__538123__D98-170

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01518.22 best	PolyG_pol	108.5	4.40e-31	100.0%	22.9%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2pusA05	1.10.1740.80	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A ›	0.60	42.0	4.33e-01	81.9%	77.5%
4dz6A00	3.30.70.141	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain	0.55	44.0	3.52e-01	86.7%	70.2%
3mfnB00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.53	40.0	3.52e-01	81.9%	75.4%
6ks6A02	3.30.260.10	Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain	0.53	37.0	3.41e-01	73.5%	74.1%
2kj9A00	1.10.150.130	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain	0.52	37.0	3.39e-01	77.1%	56.8%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4932651	304.60.1.2 ↗	a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10	0.58	46.0	3.56e-01	88.0%	48.5%
3514296	304.34.1.1 ↗	a+b two layers › Alpha-beta plaits › Nucleoside diphosphate kinases › Nucleoside diphosphate kinases › NDK	0.53	41.0	3.48e-01	84.3%	79.3%
3593211	304.34.1.0 ↗	a+b two layers › Alpha-beta plaits › Nucleoside diphosphate kinases › Nucleoside diphosphate kinases	0.51	41.0	3.44e-01	90.4%	74.0%
5049142	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.50	36.0	3.20e-01	77.1%	67.7%

D2 high residues 166-351

PDB

Domain cluster: rep: Sigma_NS__YP_009246470__Mahlapitsi_orthoreovirus__2170064__D179-246_283-370

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01518.22 best	PolyG_pol	283.5	2.90e-84	100.0%	52.5%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1q7hA01	3.10.450.120	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1	0.61	19.0	3.23e-01	90.9%	78.5%
3kxeA00	3.30.2310.20	Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like	0.56	26.0	3.61e-01	96.2%	87.2%
1y4oA00	3.30.450.30	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic	0.54	26.0	3.27e-01	99.5%	76.0%
2o30A00	2.60.40.790	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.52	19.0	2.70e-01	92.5%	67.1%
1wguA01	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.52	22.0	2.74e-01	90.9%	60.9%
5tw4A02	2.30.140.20	Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Penicillin-binding protein 4, C-terminal domain	0.52	19.0	3.00e-01	97.3%	85.5%
3b9qA01	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.50	25.0	3.40e-01	77.4%	96.6%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4950471	243.6.1.0 ↗	a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain	0.69	20.0	3.57e-01	95.2%	78.3%
4971298	319.1.1.0 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones	0.63	18.0	2.87e-01	96.8%	61.3%
4981259	243.6.1.1 ↗	a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947	0.63	21.0	3.39e-01	90.9%	80.0%
3848548	109.29.1.2 ↗	alpha superhelices › Repetitive alpha hairpins › Chloroplast inner membrane protein TIC110 › Chloroplast inner membrane protein TIC110 › PLU-1	0.62	33.0	4.24e-01	73.7%	88.6%
3624439	611.4.1.0 ↗	alpha bundles › N-cbl like › PG0775 C-terminal domain-like › PG0775 C-terminal domain-like	0.59	27.0	2.87e-01	78.5%	45.8%
3951704	103.12.1.0 ↗	alpha arrays › RuvA-C › ANTAR domain › ANTAR domain	0.58	24.0	3.79e-01	97.8%	100.0%
3511968	319.1.1.0 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones	0.55	18.0	2.93e-01	87.6%	75.7%
4118498	181.1.1.1 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N	0.51	26.0	3.48e-01	75.3%	98.8%
1447939	11.36.1.2 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Csd4 Ig-like domain › Csd4 Ig-like domain › Peptidase_M99_m	0.51	19.0	3.08e-01	89.2%	89.2%