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nsP2
Euk-VirBarmah_Forest_virus
nsP2__NP_818996__Barmah_Forest_virus__11020
Identity
- Accession:
- NP_818996 ↗
- Protein ID:
- nsP2
- Kingdom:
- euk
Quality
79.6
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Togaviridae›
Alphavirus›
Barmah_Forest_virus
TaxID: 11020
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 177-311_454-462
Domain cluster:
rep: KX578043.1__AOT27930.1__X__00015__D87-267
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01443.25 best | Viral_helicase1 | 59.4 | 6.80e-16 | 91.7% | 50.4% |
D2
high
residues 324-452
Domain cluster:
rep: TGB1_protein__NP_619560__Garlic_latent_virus__12458__D129-228
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01443.25 best | Viral_helicase1 | 22.2 | 1.50e-04 | 77.5% | 29.4% |
| PF01707.23 | Peptidase_C9 | 27.0 | 4.50e-06 | 18.6% | 11.9% |
D3
high
residues 477-593
Domain cluster:
rep: nsP2_protein__NP_740650__Eastern_equine_encephalitis_virus__11021__D477-591
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01707.23 best | Peptidase_C9 | 165.9 | 1.30e-48 | 100.0% | 57.9% |
D4
high
residues 624-790
Domain cluster:
rep: IMGVR_UViG_3300009616_000257-3300009616-Ga0116111_100275611__D486-632
D5
medium
residues 20-65_67-162
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20896.3 best | ToMV_Hel_N | 208.8 | 7.00e-62 | 100.0% | 89.9% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kx5A00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.53 | 32.0 | 3.29e-01 | 78.9% | 62.2% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2514718 | 3590.1.1.1 ↗ | a+b complex topology › Tomato mosaic virus helicase N-terminal domain › Tomato mosaic virus helicase N-terminal domain › Tomato mosaic virus helicase N-terminal domain › ToMV_Hel_N | 0.86 | 77.0 | 7.22e-01 | 100.0% | 80.2% |
| 3253412 | 109.3.1.145 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › HAMP | 0.52 | 34.0 | 3.35e-01 | 82.4% | 60.0% |