←Back to structures
nsP4
Euk-VirHighlands_J_virus
nsP4__YP_002802304__Highlands_J_virus__11024
Identity
- Accession:
- YP_002802304 ↗
- Protein ID:
- nsP4
- Kingdom:
- euk
Quality
81.6
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Togaviridae›
Alphavirus›
Highlands_J_virus
TaxID: 11024
Cluster
View cluster (32 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 30-101
Domain cluster:
rep: RNA-directed_RNA_polymerase_nsp4__YP_009020586__Madariaga_virus__1440170__D35-90
D2
medium
residues 109-187_341-376_497-608
Domain cluster:
rep: hypothetical_protein__YP_009337242__Hubei_virga-like_virus_11__1923326__D570-604_623-662_810-820_945-1065
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00978.27 best | RdRP_2 | 57.6 | 1.50e-15 | 45.4% | 22.3% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2do3A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 12.0 | 2.71e-01 | 85.9% | 76.5% |
| 7u32F02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.56 | 13.0 | 2.90e-01 | 83.7% | 88.2% |
| 2eczA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 16.0 | 2.82e-01 | 85.5% | 81.4% |
| 1x6bA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 15.0 | 2.89e-01 | 85.5% | 89.1% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2994348 | 304.48.1.9 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1,CoV_RPol_N | 0.53 | 45.0 | 3.00e-01 | 91.6% | 51.2% |
| 4927852 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 19.0 | 2.93e-01 | 90.3% | 78.9% |
| 3269226 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.52 | 19.0 | 3.13e-01 | 90.7% | 94.7% |
D3
medium
residues 188-211_249-315_411-425
Domain cluster:
rep: nsp4_nonstructural_protein_-putative_start-_putative__NP_740669__Sindbis_virus__11034__D271-320_413-429
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00978.27 best | RdRP_2 | 50.3 | 2.60e-13 | 77.4% | 16.1% |
D4
medium
residues 212-248_316-340_377-410_426-496
Domain cluster:
rep: ORF_1b__YP_003289291__Strawberry_pallidosis-associated_virus__227507__D117-174_213-235_276-309
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00978.27 best | RdRP_2 | 85.6 | 5.00e-24 | 63.5% | 26.6% |