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nsp16
Euk-VirHuman_coronavirus_HKU1
nsp16__YP_460023__Human_coronavirus_HKU1__290028
Identity
- Accession:
- YP_460023 ↗
- Protein ID:
- nsp16
- Kingdom:
- euk
Quality
89.4
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Nidovirales›
Coronaviridae›
Betacoronavirus›
Human_coronavirus_HKU1
TaxID: 290028
Cluster
View cluster (66 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-282
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06460.19 best | CoV_Methyltr_2 | 507.2 | 1.90e-152 | 100.0% | 94.0% |
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xyqA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.98 | 96.0 | 9.50e-01 | 100.0% | 96.9% |
| 3trkA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.78 | 51.0 | 6.23e-01 | 76.5% | 99.5% |
| 5ezqA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.77 | 50.0 | 6.17e-01 | 77.6% | 99.5% |
| 6jp6D01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.76 | 54.0 | 5.99e-01 | 70.8% | 100.0% |
| 6yu8A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.74 | 60.0 | 6.25e-01 | 82.6% | 100.0% |
| 3iylW03 | 3.40.50.10760 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Reovirus core | 0.71 | 58.0 | 6.17e-01 | 84.0% | 96.0% |
| 2dpmA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.71 | 39.0 | 5.19e-01 | 85.1% | 96.1% |
| 1o89A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.69 | 41.0 | 5.19e-01 | 75.1% | 96.4% |
| 1g38A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.68 | 49.0 | 5.48e-01 | 72.6% | 92.4% |
| 3ssmC02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.66 | 47.0 | 5.42e-01 | 93.6% | 95.3% |
| 1uwvA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.65 | 45.0 | 5.26e-01 | 74.4% | 95.7% |
| 2vn8A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.65 | 41.0 | 5.03e-01 | 75.4% | 96.2% |
| 2cb0A02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.62 | 34.0 | 4.59e-01 | 80.4% | 99.3% |
| 2f8lA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.61 | 49.0 | 5.33e-01 | 84.7% | 96.3% |
| 4lecA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.61 | 43.0 | 5.11e-01 | 84.3% | 100.0% |
| 1mdbA01 | 3.40.50.980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 30.0 | 3.92e-01 | 79.0% | 83.5% |
| 1hv8A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 33.0 | 4.29e-01 | 80.4% | 97.4% |
| 2pbfA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 40.0 | 4.59e-01 | 82.2% | 91.7% |
| 4k05A01 | 3.40.50.12170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein PF07075, DUF1343 | 0.57 | 40.0 | 4.44e-01 | 70.8% | 100.0% |
| 1v8dC00 | 3.40.50.10360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein TT1679 | 0.55 | 35.0 | 4.24e-01 | 83.6% | 94.7% |
| 3d3kA00 | 3.40.50.10260 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › YjeF N-terminal domain | 0.55 | 43.0 | 4.68e-01 | 88.3% | 96.6% |
| 3grfA01 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.55 | 27.0 | 3.77e-01 | 95.4% | 94.2% |
| 1yb2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 42.0 | 4.67e-01 | 91.8% | 97.0% |
| 4bjhB01 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.54 | 29.0 | 3.86e-01 | 96.8% | 95.9% |
| 4e4yA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 41.0 | 4.40e-01 | 76.9% | 94.6% |
| 1kaeA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.54 | 28.0 | 3.29e-01 | 77.9% | 69.3% |
| 2fi1A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.53 | 24.0 | 3.50e-01 | 82.9% | 92.7% |
| 3l7iA01 | 3.40.50.11820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CDP-glycerol glycerophosphotransferase, N-terminal domain | 0.53 | 36.0 | 3.99e-01 | 78.3% | 84.1% |
| 1gd9A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.53 | 40.0 | 4.48e-01 | 84.0% | 99.1% |
| 7yosA01 | 3.90.1640.30 | Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › | 0.52 | 35.0 | 4.12e-01 | 87.2% | 96.3% |
| 2gnpA00 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 42.0 | 4.37e-01 | 82.6% | 99.6% |
| 4iw7A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.52 | 37.0 | 4.14e-01 | 83.6% | 90.9% |
| 3eleA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.52 | 41.0 | 4.47e-01 | 84.0% | 99.1% |
| 1cr2A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 38.0 | 4.13e-01 | 85.8% | 90.4% |
| 1d2fA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.51 | 40.0 | 4.27e-01 | 83.6% | 93.0% |
| 2eo5A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.51 | 38.0 | 3.93e-01 | 90.7% | 81.4% |
| 2ynmC03 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.50 | 21.0 | 2.95e-01 | 84.3% | 78.9% |
| 2zjgA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.50 | 40.0 | 4.25e-01 | 83.6% | 91.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3099001 | 2003.1.5.56 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CoV_Methyltr_2 | 0.98 | 97.0 | 9.43e-01 | 100.0% | 93.4% |
| 3929585 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.80 | 69.0 | 6.33e-01 | 89.0% | 97.4% |
| 3606481 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.79 | 57.0 | 6.31e-01 | 73.3% | 97.4% |
| 3701544 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.78 | 57.0 | 6.13e-01 | 73.3% | 93.8% |
| 3395998 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.78 | 67.0 | 5.77e-01 | 89.0% | 94.5% |
| 4051520 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.78 | 67.0 | 5.80e-01 | 89.0% | 95.1% |
| 4945278 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.77 | 52.0 | 6.32e-01 | 86.5% | 100.0% |
| 4314918 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.77 | 54.0 | 6.34e-01 | 83.6% | 97.5% |
| 5078688 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.76 | 54.0 | 6.29e-01 | 84.7% | 96.7% |
| 5032223 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.75 | 53.0 | 6.26e-01 | 84.3% | 98.5% |
| None | — | 0.75 | 54.0 | 5.68e-01 | 73.3% | 90.8% | |
| 3317203 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.75 | 56.0 | 5.46e-01 | 75.1% | 85.3% |
| 4018886 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.75 | 55.0 | 5.18e-01 | 75.1% | 90.4% |
| 3595450 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.74 | 55.0 | 5.58e-01 | 75.1% | 89.1% |
| 3395438 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.73 | 44.0 | 5.57e-01 | 95.7% | 96.5% |
| 4096546 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.73 | 54.0 | 6.07e-01 | 83.3% | 94.5% |
| None | — | 0.72 | 55.0 | 5.64e-01 | 77.6% | 88.7% | |
| 4933286 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.72 | 52.0 | 6.05e-01 | 73.7% | 98.1% |
| 3273255 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.71 | 48.0 | 5.65e-01 | 75.1% | 95.0% |
| 3602141 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.67 | 50.0 | 4.49e-01 | 74.7% | 71.6% |
| 4235408 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.67 | 54.0 | 5.81e-01 | 94.3% | 94.8% |
| 5030303 | 2003.1.5.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 | 0.65 | 40.0 | 4.99e-01 | 84.0% | 96.1% |
| 4027282 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.65 | 54.0 | 5.12e-01 | 85.1% | 91.9% |
| None | — | 0.64 | 47.0 | 4.54e-01 | 74.7% | 91.6% | |
| 4194544 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.64 | 42.0 | 4.93e-01 | 87.2% | 90.5% |
| 3961372 | 2003.1.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ADH_zinc_N | 0.63 | 44.0 | 4.77e-01 | 88.6% | 84.2% |
| 4045244 | 7512.1.1.3 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 | 0.61 | 34.0 | 4.19e-01 | 78.6% | 84.0% |
| 4491262 | 2003.1.1.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH,SDH_C | 0.61 | 43.0 | 4.64e-01 | 70.8% | 94.2% |
| 4207544 | 7512.1.1.12 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_tran_28_C | 0.60 | 34.0 | 3.90e-01 | 78.6% | 71.9% |
| 4396248 | 2003.1.14.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Aspartate/ornithine carbamoyltransferase › OTCace | 0.58 | 40.0 | 4.68e-01 | 87.5% | 97.0% |
| 4045219 | 2003.1.5.49 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_30 | 0.57 | 46.0 | 4.69e-01 | 81.9% | 90.4% |
| 4927143 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 29.0 | 3.96e-01 | 83.6% | 95.0% |
| 3345250 | 7512.1.1.32 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 | 0.57 | 34.0 | 3.66e-01 | 77.2% | 66.5% |
| 4575108 | 7512.1.1.15 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyphos_transf | 0.54 | 33.0 | 3.74e-01 | 77.6% | 77.2% |
| 5075291 | 7574.1.1.5 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › TPP_enzyme_C | 0.52 | 40.0 | 4.20e-01 | 80.8% | 88.0% |
| 2580403 | 7501.1.1.1 ↗ | a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › DHFR_1 | 0.52 | 32.0 | 3.88e-01 | 85.4% | 95.4% |