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nsp1_2
Euk-VirCanada_goose_coronavirus
nsp1_2__YP_009755911__Canada_goose_coronavirus__2569586
Identity
- Accession:
- YP_009755911 ↗
- Protein ID:
- nsp1_2
- Kingdom:
- euk
Quality
39.8
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Nidovirales›
Coronaviridae›
Gammacoronavirus›
Canada_goose_coronavirus
TaxID: 2569586
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 16-101
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17896.7 best | NSP2_gammaCoV | 74.5 | 1.30e-20 | 100.0% | 24.3% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zunB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 58.0 | 4.48e-01 | 100.0% | 92.4% |
| 3p26A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 54.0 | 4.03e-01 | 100.0% | 83.8% |
| 2gj8D00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 51.0 | 4.15e-01 | 100.0% | 91.9% |
| 5d8nA01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.56 | 46.0 | 3.68e-01 | 93.0% | 77.7% |
| 2jgdB02 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.55 | 48.0 | 3.31e-01 | 100.0% | 71.6% |
| 1u5tB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 32.0 | 3.58e-01 | 94.2% | 72.5% |
| 4fidA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 48.0 | 3.77e-01 | 100.0% | 97.9% |
| 1darA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 48.0 | 3.48e-01 | 100.0% | 92.2% |
| 2qtfA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 47.0 | 3.87e-01 | 100.0% | 95.8% |
| 1ryhA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 46.0 | 3.81e-01 | 100.0% | 92.4% |
| 4b3xA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 46.0 | 3.80e-01 | 100.0% | 92.4% |
| 4r2fA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 42.0 | 3.26e-01 | 89.5% | 50.3% |
| 2o2pA02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.51 | 43.0 | 3.47e-01 | 100.0% | 99.0% |
| 5izdA02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.50 | 42.0 | 3.37e-01 | 97.7% | 99.0% |
| 2bg1A01 | 3.90.1310.40 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › | 0.50 | 40.0 | 4.22e-01 | 95.3% | 98.7% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4813386 | 7530.1.1.1 ↗ | a/b three-layered sandwiches › Replicase polyprotein 1a N-terminal macro-like domain › Replicase polyprotein 1a N-terminal macro-like domain › Replicase polyprotein 1a N-terminal macro-like domain › NSP2_gammaCoV | 0.87 | 80.0 | 7.98e-01 | 98.8% | 97.8% |
| 5058284 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.62 | 54.0 | 4.17e-01 | 100.0% | 96.7% |
| 4945346 | 2004.1.1.119 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA | 0.62 | 54.0 | 4.28e-01 | 100.0% | 94.2% |
| 3506709 | 101.1.2.267 ↗ | alpha arrays › HTH › HTH › winged helix domain › Nse4_C | 0.61 | 34.0 | 3.12e-01 | 95.3% | 40.9% |
| 4304578 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 35.0 | 3.71e-01 | 95.3% | 65.3% |
| 3936864 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.60 | 52.0 | 4.14e-01 | 100.0% | 89.2% |
| 4643309 | 2004.1.1.702 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, MCM, AAA_2 | 0.60 | 46.0 | 3.11e-01 | 83.7% | 32.5% |
| 3657579 | 101.1.2.267 ↗ | alpha arrays › HTH › HTH › winged helix domain › Nse4_C | 0.59 | 33.0 | 3.61e-01 | 98.8% | 65.7% |
| 4377664 | 2004.1.1.545 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, AAA_2, AAA_5 | 0.59 | 46.0 | 3.12e-01 | 83.7% | 28.3% |
| 3652148 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 52.0 | 3.96e-01 | 100.0% | 94.8% |
| 3684733 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.58 | 50.0 | 3.78e-01 | 100.0% | 86.2% |
| 3249147 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.57 | 50.0 | 3.95e-01 | 100.0% | 91.1% |
| 3979599 | 2004.1.1.305 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IcmF-related_N | 0.57 | 50.0 | 3.30e-01 | 100.0% | 48.8% |
| 5072944 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 34.0 | 3.91e-01 | 94.2% | 85.0% |
| 5014384 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.54 | 32.0 | 2.95e-01 | 94.2% | 43.5% |
| 4996616 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 34.0 | 3.93e-01 | 94.2% | 94.9% |
| 1117751 | 4322.1.1.0 ↗ | a+b complex topology › Flu NP-like › Flu NP-like › Flu NP-like | 0.53 | 40.0 | 3.63e-01 | 81.4% | 65.0% |
| 5045709 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 46.0 | 3.82e-01 | 100.0% | 93.5% |
| 3613771 | 7529.1.1.8 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Pdase_M17_N2 | 0.52 | 42.0 | 3.23e-01 | 93.0% | 72.3% |
| 3506749 | 633.21.1.23 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 | 0.51 | 36.0 | 2.98e-01 | 74.4% | 63.0% |
| 3424143 | 109.4.1.2687 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28645 | 0.50 | 35.0 | 2.31e-01 | 75.6% | 27.3% |
| 5007853 | 101.1.2.192 ↗ | alpha arrays › HTH › HTH › winged helix domain › B_lactamase-like_C | 0.50 | 34.0 | 3.79e-01 | 94.2% | 88.4% |
D2
medium
residues 262-349
D3
medium
residues 548-607