nsp1

Euk-Vir

Betacoronavirus_England_1

nsp1__YP_009944281__Betacoronavirus_England_1__1263720

Identity

70.4 mean pLDDT

Orthornavirae› Pisuviricota› Pisoniviricetes› Nidovirales› Coronaviridae› Betacoronavirus› Betacoronavirus_England_1

TaxID: 1263720

View cluster (15 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-146

PDB

Domain cluster: rep: leader_protein__YP_009924319__Human_coronavirus_OC43__31631__D57-193

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF11501.14 best	bCoV_NSP1	116.3	1.20e-33	100.0%	84.1%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5fpwA00	3.90.70.10	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases	0.58	47.0	3.59e-01	89.2%	86.6%
5e53A02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.50	28.0	3.08e-01	81.7%	66.7%
1x5fA00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.50	34.0	3.47e-01	70.0%	85.8%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4861314	4356.1.1.1 ↗	beta complex topology › Coronavirus nsp1 › Coronavirus nsp1 › Coronavirus nsp1 › bCoV_NSP1	0.82	72.0	7.03e-01	99.2%	86.7%
4260202	9.15.1.1 ↗	beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD	0.51	40.0	3.22e-01	83.3%	98.3%
5034467	219.1.1.13 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core	0.51	38.0	3.21e-01	78.3%	73.5%
5078649	219.1.1.13 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core	0.51	41.0	3.53e-01	88.3%	96.0%