←Back to structures
nsp1
Euk-VirSARS_coronavirus_Tor2
nsp1__YP_009944366__SARS_coronavirus_Tor2__227984
Identity
- Accession:
- YP_009944366 ↗
- Protein ID:
- nsp1
- Kingdom:
- euk
Quality
60.6
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Nidovirales›
Coronaviridae›
Betacoronavirus›
SARS_coronavirus_Tor2
TaxID: 227984
Cluster
View cluster (15 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 8-128
Domain cluster:
rep: leader_protein__YP_009924319__Human_coronavirus_OC43__31631__D57-193
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF11501.14 best | bCoV_NSP1 | 47.6 | 2.00e-12 | 100.0% | 88.4% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zbdA00 | 2.30.30.1000 | Mainly Beta › Roll › SH3 type barrels. › Replicase polyprotein 1a | 0.74 | 62.0 | 6.46e-01 | 98.3% | 97.3% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4861314 | 4356.1.1.1 ↗ | beta complex topology › Coronavirus nsp1 › Coronavirus nsp1 › Coronavirus nsp1 › bCoV_NSP1 | 0.85 | 77.0 | 7.59e-01 | 95.9% | 96.1% |
| 4834311 | 4356.1.1.1 ↗ | beta complex topology › Coronavirus nsp1 › Coronavirus nsp1 › Coronavirus nsp1 › bCoV_NSP1 | 0.82 | 78.0 | 7.37e-01 | 100.0% | 86.4% |
| 2521874 | 4356.1.1.2 ↗ | beta complex topology › Coronavirus nsp1 › Coronavirus nsp1 › Coronavirus nsp1 › CNV-Replicase_N | 0.74 | 62.0 | 6.44e-01 | 98.3% | 94.7% |