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nsp2
Euk-VirMurine_hepatitis_virus
nsp2__YP_009915674__Murine_hepatitis_virus__11138
Identity
- Accession:
- YP_009915674 ↗
- Protein ID:
- nsp2
- Kingdom:
- euk
Quality
60.3
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Nidovirales›
Coronaviridae›
Betacoronavirus›
Murine_hepatitis_virus
TaxID: 11138
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-91
Domain cluster:
rep: nsp2__YP_009924384__Rousettus_bat_coronavirus_HKU9__694006__D2-83
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF11963.14 best | B-CoV_A_NSP1 | 149.0 | 3.00e-43 | 100.0% | 24.8% |
D2
high
residues 105-137_181-242
D3
high
residues 384-485
Domain cluster:
rep: nsp2__YP_009924410__Rabbit_coronavirus_HKU14__1160968__D386-487
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1r4wA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 39.0 | 3.17e-01 | 72.5% | 71.6% |
| 7wu8B01 | 1.20.1160.20 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › | 0.56 | 37.0 | 4.10e-01 | 73.5% | 86.1% |
| 7oq4Z01 | 1.20.120.950 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 | 0.54 | 38.0 | 3.93e-01 | 100.0% | 77.6% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4269668 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.59 | 33.0 | 4.20e-01 | 93.1% | 100.0% |
| 4941220 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.56 | 36.0 | 4.02e-01 | 93.1% | 83.7% |
| 4022052 | 108.1.1.11 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › Cullin_binding | 0.56 | 40.0 | 3.80e-01 | 75.5% | 68.0% |
| 4928181 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.55 | 35.0 | 3.84e-01 | 93.1% | 77.6% |
| 5047947 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.53 | 37.0 | 2.82e-01 | 72.5% | 85.2% |
D4
high
residues 493-583
Domain cluster:
rep: nsp2__YP_009944311__Tylonycteris_bat_coronavirus_HKU4__694007__D585-649
D5
medium
residues 254-368